Literature DB >> 11932432

Characterization and complete nucleotide sequence of an unusual reptilian retrovirus recovered from the order Crocodylia.

Joanne Martin1, Peter Kabat, Elisabeth Herniou, Michael Tristem.   

Abstract

A novel group of retroviruses found within the order Crocodylia are described. Phylogenetic analyses demonstrate that they are probably the most divergent members of the Retroviridae described to date; even the most conserved regions of Pol show an average of only 23% amino acid identity when compared to other retroviruses.

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Year:  2002        PMID： 11932432      PMCID： PMC155058          DOI： 10.1128/jvi.76.9.4651-4654.2002

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  16 in total

1.  A highly divergent retroviral sequence in the tuatara (Sphenodon).

Authors:  M Tristem; T Myles; F Hill
Journal:  Virology       Date:  1995-06-20       Impact factor: 3.616

2.  Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea.

Authors:  H Kishino; M Hasegawa
Journal:  J Mol Evol       Date:  1989-08       Impact factor: 2.395

Review 3.  Origins and evolutionary relationships of retroviruses.

Authors:  R F Doolittle; D F Feng; M S Johnson; M A McClure
Journal:  Q Rev Biol       Date:  1989-03       Impact factor: 4.875

4.  Presence of env genes in members of the RTVL-H family of human endogenous retrovirus-like elements.

Authors:  Y Hirose; M Takamatsu; F Harada
Journal:  Virology       Date:  1993-01       Impact factor: 3.616

5.  Generic affinities among crocodilians as revealed by DNA fingerprinting with a Bkm-derived probe.

Authors:  R K Aggarwal; K C Majumdar; J W Lang; L Singh
Journal:  Proc Natl Acad Sci U S A       Date:  1994-10-25       Impact factor: 11.205

6.  Identification and characterization of novel human endogenous retrovirus families by phylogenetic screening of the human genome mapping project database.

Authors:  M Tristem
Journal:  J Virol       Date:  2000-04       Impact factor: 5.103

7.  Interclass transmission and phyletic host tracking in murine leukemia virus-related retroviruses.

Authors:  J Martin; E Herniou; J Cook; R W O'Neill; M Tristem
Journal:  J Virol       Date:  1999-03       Impact factor: 5.103

8.  An RNA pseudoknot and an optimal heptameric shift site are required for highly efficient ribosomal frameshifting on a retroviral messenger RNA.

Authors:  M Chamorro; N Parkin; H E Varmus
Journal:  Proc Natl Acad Sci U S A       Date:  1992-01-15       Impact factor: 11.205

9.  Origin and evolution of retroelements based upon their reverse transcriptase sequences.

Authors:  Y Xiong; T H Eickbush
Journal:  EMBO J       Date:  1990-10       Impact factor: 11.598

10.  Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting.

Authors:  X Chen; M Chamorro; S I Lee; L X Shen; J V Hines; I Tinoco; H E Varmus
Journal:  EMBO J       Date:  1995-02-15       Impact factor: 11.598
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  7 in total

Review 1.  Viruses in reptiles.

Authors:  Ellen Ariel
Journal:  Vet Res       Date:  2011-09-21       Impact factor: 3.683

Review 2.  The evolution, distribution and diversity of endogenous retroviruses.

Authors:  Robert Gifford; Michael Tristem
Journal:  Virus Genes       Date:  2003-05       Impact factor: 2.332

3.  Distribution of endogenous retroviruses in crocodilians.

Authors:  Weerachai Jaratlerdsiri; Clara J Rodríguez-Zárate; Sally R Isberg; Chandramaya Siska Damayanti; Lee G Miles; Nantarika Chansue; Chris Moran; Lorna Melville; Jaime Gongora
Journal:  J Virol       Date:  2009-07-15       Impact factor: 5.103

4.  Surveys of endogenous retroviruses (ERVs) in the freshwater crocodile (Crocodylus johnstoni) suggest that ERVs in Crocodylus spp. vary between species.

Authors:  Amanda Y Chong; Shannon R Kjeldsen; Jaime Gongora
Journal:  Virus Genes       Date:  2015-02-05       Impact factor: 2.332

Review 5.  Viruses infecting reptiles.

Authors:  Rachel E Marschang
Journal:  Viruses       Date:  2011-11-01       Impact factor: 5.048

6.  Strong purifying selection in endogenous retroviruses in the saltwater crocodile (Crocodylus porosus) in the Northern Territory of Australia.

Authors:  Amanda Yoon-Yee Chong; Sarah Jane Atkinson; Sally Isberg; Jaime Gongora
Journal:  Mob DNA       Date:  2012-12-05

7.  Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes.

Authors:  Amanda Y Chong; Kenji K Kojima; Jerzy Jurka; David A Ray; Arian F A Smit; Sally R Isberg; Jaime Gongora
Journal:  Retrovirology       Date:  2014-12-12       Impact factor: 4.602
  7 in total

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