Literature DB >> 11931612

GBR compounds and mepyramines as cocaine abuse therapeutics: chemometric studies on selectivity using grid independent descriptors (GRIND).

Paolo Benedetti1, Raimund Mannhold, Gabriele Cruciani, Manuel Pastor.   

Abstract

Cocaine is one of the most widely abused drugs in the industrial world. Substantial evidence has accumulated that the dopamine transporter (DAT) is a key target for cocaine regarding its reinforcing effects. This work describes the application of chemometric methods to a data set of 54 N(1)-benzhydryl-oxy-alkyl-N(4)-phenyl-alk(en)yl-piperazines (GBR compounds) and chemically related mepyramines as putative candidates in cocaine abuse therapy. The aim of the study is to gain insight into the structural requirements that determine the affinity of the data set molecules to the DAT and the serotonin transporter (SERT) as well as their inhibitory potency on dopamine uptake. The compounds in the dataset are described using the recently developed GRID independent descriptors (GRIND), which allow one to obtain fast three-dimensional quantitative structure-activity relationship models without the need of aligning and superimposing the structures; the results are interpreted in a convenient pharmacophoric-like fashion. In the first part of the work, the selectivity of the database molecules for DAT binding vs dopamine reuptake inhibition is investigated. In the second part, the selectivity of the compounds for DAT binding vs SERT binding is studied. In both cases, significant models are obtained, which define the structural features responsible for the respective selectivity profiles. Moreover, the information has potential interest for the design of new derivatives with improved selectivity.

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Year:  2002        PMID: 11931612     DOI: 10.1021/jm011007+

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  6 in total

1.  Use of alignment-free molecular descriptors in diversity analysis and optimal sampling of molecular libraries.

Authors:  Fabien Fontaine; Manuel Pastor; Hugo Gutiérrez-de-Terán; Juan J Lozano; Ferran Sanz
Journal:  Mol Divers       Date:  2003       Impact factor: 2.943

2.  Hierarchical clustering analysis of flexible GBR 12909 dialkyl piperazine and piperidine analogs.

Authors:  Kathleen M Gilbert; Carol A Venanzi
Journal:  J Comput Aided Mol Des       Date:  2006-07-20       Impact factor: 3.686

3.  Comparison of structure fingerprint and molecular interaction field based methods in explaining biological similarity of small molecules in cell-based screens.

Authors:  Pekka Tiikkainen; Antti Poso; Olli Kallioniemi
Journal:  J Comput Aided Mol Des       Date:  2008-12-03       Impact factor: 3.686

4.  Conformational analysis of methylphenidate: comparison of molecular orbital and molecular mechanics methods.

Authors:  Kathleen M Gilbert; William J Skawinski; Milind Misra; Kristina A Paris; Neelam H Naik; Ronald A Buono; Howard M Deutsch; Carol A Venanzi
Journal:  J Comput Aided Mol Des       Date:  2004-11       Impact factor: 3.686

5.  DAT/SERT selectivity of flexible GBR 12909 analogs modeled using 3D-QSAR methods.

Authors:  Kathleen M Gilbert; Terrence L Boos; Christina M Dersch; Elisabeth Greiner; Arthur E Jacobson; David Lewis; Dorota Matecka; Thomas E Prisinzano; Ying Zhang; Richard B Rothman; Kenner C Rice; Carol A Venanzi
Journal:  Bioorg Med Chem       Date:  2006-10-01       Impact factor: 3.641

6.  Conformational analysis of piperazine and piperidine analogs of GBR 12909: stochastic approach to evaluating the effects of force fields and solvent.

Authors:  Deepangi Pandit; William Roosma; Milind Misra; Kathleen M Gilbert; William J Skawinski; Carol A Venanzi
Journal:  J Mol Model       Date:  2010-04-23       Impact factor: 1.810

  6 in total

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