Literature DB >> 11928473

Estimation of genetic networks and functional structures between genes by using Bayesian networks and nonparametric regression.

Seiya Imoto1, Takao Goto, Satoru Miyano.   

Abstract

We propose a new method for constructing genetic network from gene expression data by using Bayesian networks. We use nonparametric regression for capturing nonlinear relationships between genes and derive a new criterion for choosing the network in general situations. In a theoretical sense, our proposed theory and methodology include previous methods based on Bayes approach. We applied the proposed method to the S. cerevisiae cell cycle data and showed the effectiveness of our method by comparing with previous methods.

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Year:  2002        PMID: 11928473

Source DB:  PubMed          Journal:  Pac Symp Biocomput        ISSN: 2335-6928


  48 in total

1.  Identification of genetic networks.

Authors:  Momiao Xiong; Jun Li; Xiangzhong Fang
Journal:  Genetics       Date:  2004-02       Impact factor: 4.562

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Journal:  Pharm Res       Date:  2007-03-24       Impact factor: 4.200

3.  Deciphering modular and dynamic behaviors of transcriptional networks.

Authors:  Ming Zhan
Journal:  Genomic Med       Date:  2007-05-11

4.  Analysis of gene coexpression by B-spline based CoD estimation.

Authors:  Huai Li; Yu Sun; Ming Zhan
Journal:  EURASIP J Bioinform Syst Biol       Date:  2007

Review 5.  Understanding endothelial cell apoptosis: what can the transcriptome, glycome and proteome reveal?

Authors:  Muna Affara; Benjamin Dunmore; Christopher Savoie; Seiya Imoto; Yoshinori Tamada; Hiromitsu Araki; D Stephen Charnock-Jones; Satoru Miyano; Cristin Print
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-08-29       Impact factor: 6.237

6.  A multi-layer inference approach to reconstruct condition-specific genes and their regulation.

Authors:  Ming Wu; Li Liu; Hussein Hijazi; Christina Chan
Journal:  Bioinformatics       Date:  2013-04-22       Impact factor: 6.937

7.  Inferring cluster-based networks from differently stimulated multiple time-course gene expression data.

Authors:  Yuichi Shiraishi; Shuhei Kimura; Mariko Okada
Journal:  Bioinformatics       Date:  2010-03-11       Impact factor: 6.937

8.  Inferring Transcriptional Interactions by the Optimal Integration of ChIP-chip and Knock-out Data.

Authors:  Haoyu Cheng; Lihua Jiang; Maoying Wu; Qi Liu
Journal:  Bioinform Biol Insights       Date:  2009-10-21

9.  Inference of gene pathways using mixture Bayesian networks.

Authors:  Younhee Ko; Chengxiang Zhai; Sandra Rodriguez-Zas
Journal:  BMC Syst Biol       Date:  2009-05-19

10.  Exploring temporal transcription regulation structure of Aspergillus fumigatus in heat shock by state space model.

Authors:  Jin Hwan Do; Rui Yamaguchi; Satoru Miyano
Journal:  BMC Genomics       Date:  2009-07-08       Impact factor: 3.969

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