Literature DB >> 11904187

Tandem termination signals: myth or reality?

Louise L Major1, Tina D Edgar, Po Yee Yip, Leif A Isaksson, Warren P Tate.   

Abstract

In two Escherichia coli genomes, laboratory strain K-12 and pathological strain O157:H7, tandem termination codons as a group are slightly over-represented as termination signals. Individually however, they span the range of representations, over, as expected, or under, in one or both of the strains. In vivo, tandem termination codons do not make more efficient signals. The second codon can act as a backstop where readthrough of the first has occurred, but not at the expected efficiency. UGAUGA remains an enigma, highly over-represented, but with the second UGA a relatively inefficient back up stop codon.

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Year:  2002        PMID: 11904187     DOI: 10.1016/s0014-5793(02)02301-3

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  15 in total

1.  Evolution of prokaryotic genes by shift of stop codons.

Authors:  Anna A Vakhrusheva; Marat D Kazanov; Andrey A Mironov; Georgii A Bazykin
Journal:  J Mol Evol       Date:  2010-11-17       Impact factor: 2.395

2.  Transfer-messenger RNA unfolds as it transits the ribosome.

Authors:  Iwona K Wower; Christian Zwieb; Jacek Wower
Journal:  RNA       Date:  2005-04-05       Impact factor: 4.942

3.  Comprehensive analysis of stop codon usage in bacteria and its correlation with release factor abundance.

Authors:  Gürkan Korkmaz; Mikael Holm; Tobias Wiens; Suparna Sanyal
Journal:  J Biol Chem       Date:  2014-09-12       Impact factor: 5.157

4.  Tandem termination signal in plant mRNAs.

Authors:  Alex V Kochetov; Oxana A Volkova; Alexander Poliakov; Inna Dubchak; Igor B Rogozin
Journal:  Gene       Date:  2011-04-22       Impact factor: 3.688

5.  Genome-wide prediction of stop codon readthrough during translation in the yeast Saccharomyces cerevisiae.

Authors:  I Williams; J Richardson; A Starkey; I Stansfield
Journal:  Nucleic Acids Res       Date:  2004-12-15       Impact factor: 16.971

6.  Tandem stop codons in ciliates that reassign stop codons.

Authors:  Marie Adachi; Andre R O Cavalcanti
Journal:  J Mol Evol       Date:  2009-03-18       Impact factor: 2.395

7.  Stops making sense: translational trade-offs and stop codon reassignment.

Authors:  Louise J Johnson; James A Cotton; Conrad P Lichtenstein; Greg S Elgar; Richard A Nichols; P David Polly; Steven C Le Comber
Journal:  BMC Evol Biol       Date:  2011-07-29       Impact factor: 3.260

8.  Comparison of characteristics and function of translation termination signals between and within prokaryotic and eukaryotic organisms.

Authors:  Andrew G Cridge; Louise L Major; Alhad A Mahagaonkar; Elizabeth S Poole; Leif A Isaksson; Warren P Tate
Journal:  Nucleic Acids Res       Date:  2006-04-13       Impact factor: 16.971

9.  Conservation of tandem stop codons in yeasts.

Authors:  Han Liang; Andre R O Cavalcanti; Laura F Landweber
Journal:  Genome Biol       Date:  2005-03-15       Impact factor: 13.583

10.  In eubacteria, unlike eukaryotes, there is no evidence for selection favouring fail-safe 3' additional stop codons.

Authors:  Alexander T Ho; Laurence D Hurst
Journal:  PLoS Genet       Date:  2019-09-17       Impact factor: 5.917

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