Literature DB >> 11902865

Chi(1) rotamer populations and angles of mobile surface side chains are accurately predicted by a torsion angle database potential of mean force.

G Marius Clore1, John Kuszewski.   

Abstract

The equilibrium angles and distributions of chi(1) rotamers for mobile surface side chains of the small, 63-residue, B1 domain of protein L have been calculated from the static crystal structure by rigid body/torsion angle simulated annealing using a torsion angle database potential of mean force and compared to those deduced by Monte Carlo analysis of side chain residual dipolar couplings measured in solution. Good agreement between theory and experiment is observed, indicating that for side chains undergoing rotamer averaging that is fast on the chemical shift time scale, the equilibrium angles and distribution of chi(1) rotamers are largely determined by the backbone phi/psi torsion angles.

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Year:  2002        PMID: 11902865     DOI: 10.1021/ja017712p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  45 in total

1.  Automated sequence- and stereo-specific assignment of methyl-labeled proteins by paramagnetic relaxation and methyl-methyl nuclear Overhauser enhancement spectroscopy.

Authors:  Vincenzo Venditti; Nicolas L Fawzi; G Marius Clore
Journal:  J Biomol NMR       Date:  2011-09-04       Impact factor: 2.835

2.  Reweighted atomic densities to represent ensembles of NMR structures.

Authors:  Charles D Schwieters; G Marius Clore
Journal:  J Biomol NMR       Date:  2002-07       Impact factor: 2.835

3.  Ultrahigh resolution protein structures using NMR chemical shift tensors.

Authors:  Benjamin J Wylie; Lindsay J Sperling; Andrew J Nieuwkoop; W Trent Franks; Eric Oldfield; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

4.  Solution structure of the IIAChitobiose-HPr complex of the N,N'-diacetylchitobiose branch of the Escherichia coli phosphotransferase system.

Authors:  Young-Sang Jung; Mengli Cai; G Marius Clore
Journal:  J Biol Chem       Date:  2012-05-16       Impact factor: 5.157

5.  Accurate determination of leucine and valine side-chain conformations using U-[15N/13C/2H]/[1H-(methine/methyl)-Leu/Val] isotope labeling, NOE pattern recognition, and methine Cgamma-Hgamma/Cbeta-Hbeta residual dipolar couplings: application to the 34-kDa enzyme IIA(chitobiose).

Authors:  Chun Tang; Junji Iwahara; G Marius Clore
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

6.  Smooth statistical torsion angle potential derived from a large conformational database via adaptive kernel density estimation improves the quality of NMR protein structures.

Authors:  Guillermo A Bermejo; G Marius Clore; Charles D Schwieters
Journal:  Protein Sci       Date:  2012-10-18       Impact factor: 6.725

7.  Solution structure of the IIAChitobiose-IIBChitobiose complex of the N,N'-diacetylchitobiose branch of the Escherichia coli phosphotransferase system.

Authors:  Young-Sang Jung; Mengli Cai; G Marius Clore
Journal:  J Biol Chem       Date:  2009-12-03       Impact factor: 5.157

8.  Structural basis for the auxin-induced transcriptional regulation by Aux/IAA17.

Authors:  Mookyoung Han; Yangshin Park; Iktae Kim; Eun-Hee Kim; Tae-Kyung Yu; Sangkee Rhee; Jeong-Yong Suh
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-15       Impact factor: 11.205

9.  Structural characterization of native autoinducing peptides and abiotic analogues reveals key features essential for activation and inhibition of an AgrC quorum sensing receptor in Staphylococcus aureus.

Authors:  Yftah Tal-Gan; Monika Ivancic; Gabriel Cornilescu; Claudia C Cornilescu; Helen E Blackwell
Journal:  J Am Chem Soc       Date:  2013-11-25       Impact factor: 15.419

10.  Automated error-tolerant macromolecular structure determination from multidimensional nuclear Overhauser enhancement spectra and chemical shift assignments: improved robustness and performance of the PASD algorithm.

Authors:  John J Kuszewski; Robin Augustine Thottungal; G Marius Clore; Charles D Schwieters
Journal:  J Biomol NMR       Date:  2008-07-31       Impact factor: 2.835

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