Literature DB >> 11901796

PCR-CTPP: a new genotyping technique in the era of genetic epidemiology.

N Hamajima1.   

Abstract

A new PCR method, PCR-CTPP (polymerase chain reaction with confronting two-pair primers) was invented to genotype a relatively large number of samples in a cost-effective and time-saving manner. In this method, allele-specific DNA products are amplified by means of applying appropriately designed two-pair primers (four primers) into an ordinary PCR tube. Single genotyping for G2886T at L-myc, Arg72Pro of p53 and Glu487Lys of ALDH2 as well as duplex genotyping for C-31T of IL-1B with VNTR of IL-1RN and A385T of secretor gene with se5, are demonstrated as examples with the primers and PCR conditions.

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Year:  2001        PMID: 11901796     DOI: 10.1586/14737159.1.1.119

Source DB:  PubMed          Journal:  Expert Rev Mol Diagn        ISSN: 1473-7159            Impact factor:   5.225


  20 in total

1.  Competitive amplification and unspecific amplification in polymerase chain reaction with confronting two-pair primers.

Authors:  Nobuyuki Hamajima; Toshiko Saito; Keitaro Matsuo; Kazuo Tajima
Journal:  J Mol Diagn       Date:  2002-05       Impact factor: 5.568

2.  Genetic susceptibility to nosocomial pneumonia, acute respiratory distress syndrome and poor outcome in patients at risk of critical illness.

Authors:  Lyubov E Salnikova; Tamara V Smelaya; Irina N Vesnina; Arkadiy M Golubev; Viktor V Moroz
Journal:  Inflammation       Date:  2014-04       Impact factor: 4.092

3.  Glutathione S-transferases T1 null genotype is associated with susceptibility to aristolochic acid nephropathy.

Authors:  Bicheng Chen; Yongheng Bai; Mei Sun; Xiaojie Ni; Yunxiu Yang; Yirong Yang; Shaoling Zheng; Feifei Xu; Shengchuan Dai
Journal:  Int Urol Nephrol       Date:  2011-11-25       Impact factor: 2.370

4.  Use of duplex PCR-CTPP methods for CYP2E1RsaI/IL-2 T-330G and IL-1B C-31T/TNF-A T-1031C polymorphisms.

Authors:  Yoshiko Atsuta; Haruya Kawase; Nobuyuki Hamajima; Kazuko Nishio; Yoshimitsu Niwa; Daisuke Tanaka; Kazuhito Yamamoto; Akiko Tamakoshi
Journal:  Mol Diagn       Date:  2005

5.  A new PCR method: one primer amplification of PCR-CTPP products.

Authors:  Guang Yin; Yoko Mitsuda; Takayuki Ezaki; Nobuyuki Hamajima
Journal:  Mol Biotechnol       Date:  2012-10       Impact factor: 2.695

6.  Confronting two-pair primer design for enzyme-free SNP genotyping based on a genetic algorithm.

Authors:  Cheng-Hong Yang; Yu-Huei Cheng; Li-Yeh Chuang; Hsueh-Wei Chang
Journal:  BMC Bioinformatics       Date:  2010-10-13       Impact factor: 3.169

7.  CYP1A1, GCLC, AGT, AGTR1 gene-gene interactions in community-acquired pneumonia pulmonary complications.

Authors:  Lyubov E Salnikova; Tamara V Smelaya; Arkadiy M Golubev; Alexander V Rubanovich; Viktor V Moroz
Journal:  Mol Biol Rep       Date:  2013-09-26       Impact factor: 2.316

8.  The association between RAD18 Arg302Gln polymorphism and the risk of human non-small-cell lung cancer.

Authors:  Hirotaka Kanzaki; Mamoru Ouchida; Hiroko Hanafusa; Hiromasa Yamamoto; Hiromitsu Suzuki; Masaaki Yano; Motoi Aoe; Kazue Imai; Hiroshi Date; Kei Nakachi; Kenji Shimizu
Journal:  J Cancer Res Clin Oncol       Date:  2007-07-12       Impact factor: 4.553

9.  The potential effect of gender in CYP1A1 and GSTM1 genotype-specific associations with pediatric brain tumor.

Authors:  Lyubov E Salnikova; Olesya B Belopolskaya; Natalya I Zelinskaya; Alexander V Rubanovich
Journal:  Tumour Biol       Date:  2013-05-10

10.  ALDH2 polymorphisms and bone mineral density in an elderly Japanese population.

Authors:  J Yamaguchi; Y Hasegawa; M Kawasaki; T Masui; T Kanoh; N Ishiguro; N Hamajima
Journal:  Osteoporos Int       Date:  2006-03-07       Impact factor: 4.507

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