Literature DB >> 11901680

Synchronization of glycolytic oscillations in a yeast cell population.

S Danø1, F Hynne, S De Monte, F d'Ovidio, P G Sørensen, H Westerhoff.   

Abstract

The mechanism of active phase synchronization in a suspension of oscillatory yeast cells has remained a puzzle for almost half a century. The difficulty of the problem stems from the fact that the synchronization phenomenon involves the entire metabolic network of glycolysis and fermentation, and consequently it cannot be addressed at the level of a single enzyme or a single chemical species. In this paper it is shown how this system in a CSTR (continuous flow stirred tank reactor) can be modelled quantitatively as a population of Stuart-Landau oscillators interacting by exchange of metabolites through the extracellular medium, thus reducing the complexity of the problem without sacrificing the biochemical realism. The parameters of the model can be derived by a systematic expansion from any full-scale model of the yeast cell kinetics with a supercritical Hopf bifurcation. Some parameter values can also be obtained directly from analysis of perturbation experiments. In the mean-field limit, equations for the study of populations having a distribution of frequencies are used to simulate the effect of the inherent variations between cells.

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Year:  2001        PMID: 11901680     DOI: 10.1039/b103238k

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  8 in total

1.  Modeling diauxic glycolytic oscillations in yeast.

Authors:  Bjørn Olav Hald; Preben G Sørensen
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

2.  Dynamical quorum sensing: Population density encoded in cellular dynamics.

Authors:  Silvia De Monte; Francesco d'Ovidio; Sune Danø; Preben Graae Sørensen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

3.  Stem cell modeling: From gene networks to cell populations.

Authors:  Jincheng Wu; Mahboubeh Rahmati Rostami; Emmanuel S Tzanakakis
Journal:  Curr Opin Chem Eng       Date:  2013-02-01       Impact factor: 5.163

4.  Quantitative characterization of cell synchronization in yeast.

Authors:  Sune Danø; Mads Find Madsen; Preben Graae Sørensen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-25       Impact factor: 11.205

5.  Entrainment of heterogeneous glycolytic oscillations in single cells.

Authors:  Anna-Karin Gustavsson; Caroline B Adiels; Bernhard Mehlig; Mattias Goksör
Journal:  Sci Rep       Date:  2015-03-24       Impact factor: 4.379

6.  Clostridium butyricum population balance model: Predicting dynamic metabolic flux distributions using an objective function related to extracellular glycerol content.

Authors:  Luis Miguel Serrano-Bermúdez; Andrés Fernando González Barrios; Dolly Montoya
Journal:  PLoS One       Date:  2018-12-20       Impact factor: 3.240

Review 7.  Principles, mechanisms and functions of entrainment in biological oscillators.

Authors:  Alba Jiménez; Ying Lu; Ashwini Jambhekar; Galit Lahav
Journal:  Interface Focus       Date:  2022-04-15       Impact factor: 4.661

8.  Desynchronisation of glycolytic oscillations in yeast cell populations.

Authors:  André Weber; Yury Prokazov; Werner Zuschratter; Marcus J B Hauser
Journal:  PLoS One       Date:  2012-09-11       Impact factor: 3.240

  8 in total

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