Literature DB >> 11901122

Sequence of the Tribolium castaneum homeotic complex: the region corresponding to the Drosophila melanogaster antennapedia complex.

Susan J Brown1, John P Fellers, Teresa D Shippy, Elizabeth A Richardson, Mark Maxwell, Jeffery J Stuart, Robin E Denell.   

Abstract

The homeotic selector genes of the red flour beetle, Tribolium castaneum, are located in a single cluster. We have sequenced the region containing the homeotic selector genes required for proper development of the head and anterior thorax, which is the counterpart of the ANTC in Drosophila. This 280-kb interval contains eight homeodomain-encoding genes, including single orthologs of the Drosophila genes labial, proboscipedia, Deformed, Sex combs reduced, fushi tarazu, and Antennapedia, as well as two orthologs of zerknüllt. These genes are all oriented in the same direction, as are the Hox genes of amphioxus, mice, and humans. Although each transcription unit is similar to its Drosophila counterpart in size, the Tribolium genes contain fewer introns (with the exception of the two zerknüllt genes), produce shorter mRNAs, and encode smaller proteins. Unlike the ANTC, this region of the Tribolium HOMC contains no additional genes.

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Year:  2002        PMID: 11901122      PMCID: PMC1462024     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  45 in total

1.  Progression of the cell cycle through mitosis leads to abortion of nascent transcripts.

Authors:  A W Shermoen; P H O'Farrell
Journal:  Cell       Date:  1991-10-18       Impact factor: 41.582

2.  Class 3 Hox genes in insects and the origin of zen.

Authors:  F Falciani; B Hausdorf; R Schröder; M Akam; D Tautz; R Denell; S Brown
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-06       Impact factor: 11.205

3.  Molecular characterization and embryonic expression of the even-skipped ortholog of Tribolium castaneum.

Authors:  S J Brown; J K Parrish; R W Beeman; R E Denell
Journal:  Mech Dev       Date:  1997-01       Impact factor: 1.882

4.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

5.  MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data.

Authors:  K Quandt; K Frech; H Karas; E Wingender; T Werner
Journal:  Nucleic Acids Res       Date:  1995-12-11       Impact factor: 16.971

6.  Archetypal organization of the amphioxus Hox gene cluster.

Authors:  J Garcia-Fernández; P W Holland
Journal:  Nature       Date:  1994-08-18       Impact factor: 49.962

7.  The beetle Tribolium castaneum has a fushi tarazu homolog expressed in stripes during segmentation.

Authors:  S J Brown; R B Hilgenfeld; R E Denell
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-20       Impact factor: 11.205

8.  The mouse Hox-1.3 gene is functionally equivalent to the Drosophila Sex combs reduced gene.

Authors:  J J Zhao; R A Lazzarini; L Pick
Journal:  Genes Dev       Date:  1993-03       Impact factor: 11.361

9.  Structural organization and sequence of the homeotic gene Antennapedia of Drosophila melanogaster.

Authors:  S Schneuwly; A Kuroiwa; P Baumgartner; W J Gehring
Journal:  EMBO J       Date:  1986-04       Impact factor: 11.598

10.  The Tribolium homeotic gene Abdominal is homologous to abdominal-A of the Drosophila bithorax complex.

Authors:  J J Stuart; S J Brown; R W Beeman; R E Denell
Journal:  Development       Date:  1993-01       Impact factor: 6.868

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  15 in total

1.  Patterns of conservation and change in honey bee developmental genes.

Authors:  Peter K Dearden; Megan J Wilson; Lisha Sablan; Peter W Osborne; Melanie Havler; Euan McNaughton; Kiyoshi Kimura; Natalia V Milshina; Martin Hasselmann; Tanja Gempe; Morten Schioett; Susan J Brown; Christine G Elsik; Peter W H Holland; Tatsuhiko Kadowaki; Martin Beye
Journal:  Genome Res       Date:  2006-10-25       Impact factor: 9.043

2.  Establishment of tribolium as a genetic model system and its early contributions to evo-devo.

Authors:  Rob Denell
Journal:  Genetics       Date:  2008-12       Impact factor: 4.562

3.  Conserved cluster organization of insect Runx genes.

Authors:  Riyue Bao; Markus Friedrich
Journal:  Dev Genes Evol       Date:  2008-08-29       Impact factor: 0.900

4.  The ten Hox genes of the millipede Glomeris marginata.

Authors:  Ralf Janssen; Wim G M Damen
Journal:  Dev Genes Evol       Date:  2006-07-01       Impact factor: 0.900

5.  Organization of the Hox gene cluster of the silkworm, Bombyx mori: a split of the Hox cluster in a non-Drosophila insect.

Authors:  Yuji Yasukochi; Laksmikutty A Ashakumary; Chengcang Wu; Atsuo Yoshido; Junko Nohata; Kazuei Mita; Ken Sahara
Journal:  Dev Genes Evol       Date:  2004-10-14       Impact factor: 0.900

6.  Selenoproteinless animals: selenophosphate synthetase SPS1 functions in a pathway unrelated to selenocysteine biosynthesis.

Authors:  Alexey V Lobanov; Dolph L Hatfield; Vadim N Gladyshev
Journal:  Protein Sci       Date:  2008-01       Impact factor: 6.725

7.  Isolation of Hox cluster genes from insects reveals an accelerated sequence evolution rate.

Authors:  Heike Hadrys; Sabrina Simon; Barbara Kaune; Oliver Schmitt; Anja Schöner; Wolfgang Jakob; Bernd Schierwater
Journal:  PLoS One       Date:  2012-06-07       Impact factor: 3.240

8.  Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone, Nematostella vectensis.

Authors:  Joseph F Ryan; Maureen E Mazza; Kevin Pang; David Q Matus; Andreas D Baxevanis; Mark Q Martindale; John R Finnerty
Journal:  PLoS One       Date:  2007-01-24       Impact factor: 3.240

9.  Genomic organization and expression demonstrate spatial and temporal Hox gene colinearity in the lophotrochozoan Capitella sp. I.

Authors:  Andreas C Fröbius; David Q Matus; Elaine C Seaver
Journal:  PLoS One       Date:  2008-12-23       Impact factor: 3.240

10.  Analysis of the Tribolium homeotic complex: insights into mechanisms constraining insect Hox clusters.

Authors:  Teresa D Shippy; Matthew Ronshaugen; Jessica Cande; Jianping He; Richard W Beeman; Michael Levine; Susan J Brown; Robin E Denell
Journal:  Dev Genes Evol       Date:  2008-04-08       Impact factor: 0.900

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