Literature DB >> 11883776

Sequence-specific assignment of histidine and tryptophan ring 1H, 13C and 15N resonances in 13C/15N- and 2H/13C/15N-labelled proteins.

Frank Löhr1, Vicky Katsemi, Marco Betz, Judith Hartleib, Heinz Rüterjans.   

Abstract

Methods are described to correlate aromatic 1H(delta)2/13C(delta)2 or 1H(epsilon)1/15N(epsilon)1 with aliphatic 13C(beta) chemical shifts of histidine and tryptophan residues, respectively. The pulse sequences exclusively rely on magnetization transfers via one-bond scalar couplings and employ [15N, 1H]- and/or [13C, 1H]-TROSY schemes to enhance sensitivity. In the case of histidine imidazole rings exhibiting slow HN-exchange with the solvent, connectivities of these proton resonances with beta-carbons can be established as well. In addition, their correlations to ring carbons can be detected in a simple [15N, 1H]-TROSY-H(N)Car experiment, revealing the tautomeric state of the neutral ring system. The novel methods are demonstrated with the 23-kDa protein xylanase and the 35-kDa protein diisopropyl-fluorophosphatase, providing nearly complete sequence-specific resonance assignments of their histidine delta-CH and tryptophan epsilon-NH groups.

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Year:  2002        PMID: 11883776     DOI: 10.1023/a:1014271204953

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  26 in total

1.  Transverse relaxation optimized triple-resonance NMR experiments for nucleic acids.

Authors:  R Fiala; J Czernek; V Sklenár
Journal:  J Biomol NMR       Date:  2000-04       Impact factor: 2.835

2.  Use of selective C alpha pulses for improvement of HN(CA)CO-D and HN(COCA)NH-D experiments.

Authors:  H Matsuo; E Kupce; H Li; G Wagner
Journal:  J Magn Reson B       Date:  1996-05

3.  PLUSH TACSY: Homonuclear planar TACSY with two-band selective shaped pulses applied to C(α),C' transfer and C (β),C (aromatic) correlations.

Authors:  T Carlomagno; M Maurer; M Sattler; M G Schwendinger; S J Glaser; C Griesinger
Journal:  J Biomol NMR       Date:  1996-09       Impact factor: 2.835

4.  Sequential resonance assignments in protein 1H nuclear magnetic resonance spectra. Basic pancreatic trypsin inhibitor.

Authors:  G Wagner; K Wüthrich
Journal:  J Mol Biol       Date:  1982-03-05       Impact factor: 5.469

5.  TROSY NMR with partially deuterated proteins.

Authors:  A Eletsky; A Kienhöfer; K Pervushin
Journal:  J Biomol NMR       Date:  2001-06       Impact factor: 2.835

6.  Single Transition-to-single Transition Polarization Transfer (ST2-PT) in [15N,1H]-TROSY.

Authors:  K V Pervushin; G Wider; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

7.  HCN, a triple-resonance NMR technique for selective observation of histidine and tryptophan side chains in 13C/15N-labeled proteins.

Authors:  J L Sudmeier; E L Ash; U L Günther; X Luo; P A Bullock; W W Bachovchin
Journal:  J Magn Reson B       Date:  1996-12

8.  Improved sensitivity and coherence selection for [15N,1H]-TROSY elements in triple resonance experiments.

Authors:  M Salzmann; G Wider; K Pervushin; K Wüthrich
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

9.  Sensitivity improvement of transverse relaxation-optimized spectroscopy.

Authors:  M Rance; J P Loria
Journal:  J Magn Reson       Date:  1999-01       Impact factor: 2.229

10.  A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin.

Authors:  M Ikura; L E Kay; A Bax
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

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  9 in total

1.  4D APSY-HBCB(CG)CDHD experiment for automated assignment of aromatic amino acid side chains in proteins.

Authors:  Barbara Krähenbühl; Sebastian Hiller; Gerhard Wider
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

2.  Heterologous expression of hen egg white lysozyme and resonance assignment of tryptophan side chains in its non-native states.

Authors:  Christian Schlörb; Katrin Ackermann; Christian Richter; Julia Wirmer; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

3.  The apo-structure of the low molecular weight protein-tyrosine phosphatase A (MptpA) from Mycobacterium tuberculosis allows for better target-specific drug development.

Authors:  Tanja Stehle; Sridhar Sreeramulu; Frank Löhr; Christian Richter; Krishna Saxena; Hendrik R A Jonker; Harald Schwalbe
Journal:  J Biol Chem       Date:  2012-08-10       Impact factor: 5.157

4.  Triple-resonance methods for complete resonance assignment of aromatic protons and directly bound heteronuclei in histidine and tryptophan residues.

Authors:  Frank Löhr; Vladimir V Rogov; Meichen Shi; Frank Bernhard; Volker Dötsch
Journal:  J Biomol NMR       Date:  2005-08       Impact factor: 2.835

5.  pH-dependent random coil (1)H, (13)C, and (15)N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements.

Authors:  Gerald Platzer; Mark Okon; Lawrence P McIntosh
Journal:  J Biomol NMR       Date:  2014-09-20       Impact factor: 2.835

6.  Improved pulse sequences for sequence specific assignment of aromatic proton resonances in proteins.

Authors:  Frank Löhr; Robert Hänsel; Vladimir V Rogov; Volker Dötsch
Journal:  J Biomol NMR       Date:  2007-01-20       Impact factor: 2.835

7.  Complete 1H, 15N and 13C assignment of the soluble domain of the ba3 oxidase subunit II of Thermus thermophilus in the reduced state.

Authors:  Marco D Mukrasch; Christian Lücke; Frank Löhr; Oliver Maneg; Bernd Ludwig; Heinz Rüterjans
Journal:  J Biomol NMR       Date:  2004-03       Impact factor: 2.835

8.  1H, 13C and 15N chemical shift assignment of Bacillus agaradhaerens family 11 xylanase.

Authors:  Marco Betz; Frank Löhr; Hans Wienk; Heinz Rüterjans
Journal:  J Biomol NMR       Date:  2002-08       Impact factor: 2.835

9.  Assignments of 1H, 15N and 13C resonances of the proline-rich matrix protein of Moloney murine leukemia virus (MA MoMuLV).

Authors:  Veronika N Noskova; Vladimir V Rogov; Frank Löhr; Yanina Rozenberg; W French Anderson; Sergey A Potekhin; Heinz Rüterjans
Journal:  J Biomol NMR       Date:  2003-03       Impact factor: 2.835

  9 in total

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