Literature DB >> 11882534

Mining the bibliome: searching for a needle in a haystack? New computing tools are needed to effectively scan the growing amount of scientific literature for useful information.

Les Grivell.   

Abstract

Mesh:

Year:  2002        PMID: 11882534      PMCID: PMC1084023          DOI: 10.1093/embo-reports/kvf059

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


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  9 in total

1.  A literature network of human genes for high-throughput analysis of gene expression.

Authors:  T K Jenssen; A Laegreid; J Komorowski; E Hovig
Journal:  Nat Genet       Date:  2001-05       Impact factor: 38.330

2.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

3.  Automated extraction of information on protein-protein interactions from the biological literature.

Authors:  T Ono; H Hishigaki; A Tanigami; T Takagi
Journal:  Bioinformatics       Date:  2001-02       Impact factor: 6.937

4.  Detecting Gene Symbols and Names in Biological Texts: A First Step toward Pertinent Information Extraction.

Authors: 
Journal:  Genome Inform Ser Workshop Genome Inform       Date:  1998

5.  In silico veritas. Data-mining and automated discovery: the truth is in there.

Authors:  J F Allen
Journal:  EMBO Rep       Date:  2001-07       Impact factor: 8.807

6.  Creating the gene ontology resource: design and implementation.

Authors: 
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

7.  Automatic analysis, theme generation, and summarization of machine-readable texts.

Authors:  G Salton; J Allan; C Buckley; A Singhal
Journal:  Science       Date:  1994-06-03       Impact factor: 47.728

8.  Global text matching for information retrieval.

Authors:  G Salton; C Buckley
Journal:  Science       Date:  1991-08-30       Impact factor: 47.728

9.  Facilitating networks of information.

Authors:  E M van Mulligen; M Diwersy; M Schmidt; H Buurman; B Mons
Journal:  Proc AMIA Symp       Date:  2000
  9 in total
  17 in total

1.  Search and retrieve. Large-scale data generation is becoming increasingly important in biological research. But how good are the tools to make sense of the data?

Authors:  Alfonso Valencia
Journal:  EMBO Rep       Date:  2002-05       Impact factor: 8.807

2.  Computational approaches to protein-protein interaction.

Authors:  Giacomo Franzot; Oliviero Carugo
Journal:  J Struct Funct Genomics       Date:  2003

3.  Dragon TF Association Miner: a system for exploring transcription factor associations through text-mining.

Authors:  Hong Pan; Li Zuo; Vidhu Choudhary; Zhuo Zhang; Shoi Houi Leow; Fui Teen Chong; Yingliang Huang; Victor Wui Siong Ong; Bijayalaxmi Mohanty; Sin Lam Tan; S P T Krishnan; Vladimir B Bajic
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

4.  Doublet method for very fast autocoding.

Authors:  Jules J Berman
Journal:  BMC Med Inform Decis Mak       Date:  2004-09-15       Impact factor: 2.796

5.  Seek and you shall find?

Authors:  Les Grivell
Journal:  EMBO Rep       Date:  2006-01       Impact factor: 8.807

6.  Dragon Plant Biology Explorer. A text-mining tool for integrating associations between genetic and biochemical entities with genome annotation and biochemical terms lists.

Authors:  Vladimir B Bajic; Merlin Veronika; Pardha Sarathi Veladandi; Archana Meka; Mok-Wei Heng; Kanagasabai Rajaraman; Hong Pan; Sanjay Swarup
Journal:  Plant Physiol       Date:  2005-08       Impact factor: 8.340

7.  Bioprospecting the Bibleome: Adding Evidence to Support the Inflammatory Basis of Cancer.

Authors:  Peter L Elkin; Andrew Frankel; Ester H Liebow-Liebling; Jared R Elkin; Mark S Tuttle; Steven H Brown
Journal:  Metabolomics (Los Angel)       Date:  2012-05-05

8.  GLAD4U: deriving and prioritizing gene lists from PubMed literature.

Authors:  Jérôme Jourquin; Dexter Duncan; Zhiao Shi; Bing Zhang
Journal:  BMC Genomics       Date:  2012-12-17       Impact factor: 3.969

9.  Association of IL12B polymorphisms with susceptibility to Graves ophthalmopathy in a Taiwan Chinese population.

Authors:  Yu-Huei Liu; Ching-Chu Chen; Li-Ling Liao; Lei Wan; Chang-Hai Tsai; Fuu-Jen Tsai
Journal:  J Biomed Sci       Date:  2012-11-19       Impact factor: 8.410

10.  Distribution of immunodeficiency fact files with XML--from Web to WAP.

Authors:  Jouni Väliaho; Pentti Riikonen; Mauno Vihinen
Journal:  BMC Med Inform Decis Mak       Date:  2005-06-26       Impact factor: 2.796

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