Literature DB >> 11880615

Asymptotic solution of the cylindrical nonlinear Poisson-Boltzmann equation at low salt concentration: analytic expressions for surface potential and preferential interaction coefficient.

Irina A Shkel1, Oleg V Tsodikov, M Thomas Record.   

Abstract

The analytic solution to the nonlinear Poisson-Boltzmann equation describing the ion distributions surrounding a nucleic acid or other cylindrical polyions as a function of polyion structural quantities and salt concentration ([salt]) has been sought for more than 80 years to predict the effect of these quantities on the thermodynamics of polyion processes. Here we report an accurate asymptotic solution of the cylindrical nonlinear Poisson-Boltzmann equation at low to moderate concentration of a symmetrical electrolyte (< or = 0.1 M 1:1 salt). The approximate solution for the potential is derived as an asymptotic series in the small parameter var epsilon(-1), where var epsilon identical with kappa(-1)/a, the ratio of the Debye length (kappa(-1)) to the polyion radius (a). From the potential at the polyion surface, we obtain the coulombic contribution to the salt-polyelectrolyte preferential interaction (Donnan) coefficient (Gamma(u)coul) per polyion charge at any reduced axial charge density xi. Gamma(u)coul is the sum of the previously recognized low-salt limiting value and a salt-dependent contribution, analytically derived here in the range of low-salt concentrations. As an example of the application of this solution, we obtain an analytic expression for the derivative of the midpoint temperature of a nucleic acid conformational transition with respect to the logarithm of salt concentration (dT(m)/d ln[salt]) in terms of [salt] and nucleic acid structural quantities. This expression explains the experimental observation that this derivative is relatively independent of salt concentration but deviates significantly from its low-salt limiting value in the range 0.01-0.1 M.

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Year:  2002        PMID: 11880615      PMCID: PMC122393          DOI: 10.1073/pnas.032480699

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  9 in total

1.  Screening of a macroion by multivalent ions: correlation-induced inversion of charge.

Authors:  B I Shklovskii
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1999-11

2.  The Potential of an Infinite Rod-Like Molecule and the Distribution of the Counter Ions.

Authors:  R M Fuoss; A Katchalsky; S Lifson
Journal:  Proc Natl Acad Sci U S A       Date:  1951-09       Impact factor: 11.205

3.  The relationship between the poisson-boltzmann model and the condensation hypothesis: an analysis based on the low salt form of the Donnan coefficient.

Authors:  C F Anderson; M T Record
Journal:  Biophys Chem       Date:  1980-06       Impact factor: 2.352

Review 4.  Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.

Authors:  M T Record; W Zhang; C F Anderson
Journal:  Adv Protein Chem       Date:  1998

5.  Heats of the helix-coil transitions of the poly A-poly U complexes.

Authors:  H Krakauer; J M Sturtevant
Journal:  Biopolymers       Date:  1968-04       Impact factor: 2.505

6.  Binding of ionic ligands to polyelectrolytes.

Authors:  D Stigter; K A Dill
Journal:  Biophys J       Date:  1996-10       Impact factor: 4.033

7.  Conformational transitions of duplex and triplex nucleic acid helices: thermodynamic analysis of effects of salt concentration on stability using preferential interaction coefficients.

Authors:  J P Bond; C F Anderson; M T Record
Journal:  Biophys J       Date:  1994-08       Impact factor: 4.033

8.  Interactions of polyelectrolytes with simple electrolytes. II. Donnan equilibria obtained with DNA in solutions of 1-1 electrolytes.

Authors:  U P Strauss; C Helfgott; H Pink
Journal:  J Phys Chem       Date:  1967-07

9.  The importance of coulombic end effects: experimental characterization of the effects of oligonucleotide flanking charges on the strength and salt dependence of oligocation (L8+) binding to single-stranded DNA oligomers.

Authors:  W Zhang; H Ni; M W Capp; C F Anderson; T M Lohman; M T Record
Journal:  Biophys J       Date:  1999-02       Impact factor: 4.033

  9 in total
  3 in total

1.  Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory.

Authors:  Vincent B Chu; Yu Bai; Jan Lipfert; Daniel Herschlag; Sebastian Doniach
Journal:  Biophys J       Date:  2007-06-29       Impact factor: 4.033

2.  Counting the ions surrounding nucleic acids.

Authors:  David R Jacobson; Omar A Saleh
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

Review 3.  Stability and kinetics of G-quadruplex structures.

Authors:  Andrew N Lane; J Brad Chaires; Robert D Gray; John O Trent
Journal:  Nucleic Acids Res       Date:  2008-08-21       Impact factor: 16.971

  3 in total

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