Literature DB >> 11880388

Species-level identification of orthopoxviruses with an oligonucleotide microchip.

Sergey Lapa1, Maxim Mikheev, Sergei Shchelkunov, Vladimir Mikhailovich, Alexander Sobolev, Vladimir Blinov, Igor Babkin, Alexander Guskov, Elena Sokunova, Alexander Zasedatelev, Lev Sandakhchiev, Andrei Mirzabekov.   

Abstract

A method for species-specific detection of orthopoxviruses pathogenic for humans and animals is described. The method is based on hybridization of a fluorescently labeled amplified DNA specimen with the oligonucleotide DNA probes immobilized on a microchip (MAGIChip). The probes identify species-specific sites within the crmB gene encoding the viral analogue of tumor necrosis factor receptor, one of the most important determinants of pathogenicity in this genus of viruses. The diagnostic procedure takes 6 h and does not require any sophisticated equipment (a portable fluorescence reader can be used).

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Year:  2002        PMID： 11880388      PMCID： PMC120230          DOI： 10.1128/JCM.40.3.753-757.2002

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  47 in total

1.  Human monkeypox in Kasai Oriental, Democratic Republic of the Congo (former Zaire). Preliminary report of October 1997 investigation.

Authors: 
Journal:  Wkly Epidemiol Rec       Date:  1997-12-05

2.  The potential of 5' nuclease PCR for detecting a single-base polymorphism in Orthopoxvirus.

Authors:  M S Ibrahim; J J Esposito; P B Jahrling; R S Lofts
Journal:  Mol Cell Probes       Date:  1997-04       Impact factor: 2.365

3.  Regioselective immobilization of short oligonucleotides to acrylic copolymer gels.

Authors:  E Timofeev; S V Kochetkova; A D Mirzabekov; V L Florentiev
Journal:  Nucleic Acids Res       Date:  1996-08-15       Impact factor: 16.971

4.  High-frequency homologous recombination in vaccinia virus DNA.

Authors:  L A Ball
Journal:  J Virol       Date:  1987-06       Impact factor: 5.103

5.  Spontaneous deletions and duplications of sequences in the genome of cowpox virus.

Authors:  D J Pickup; B S Ink; B L Parsons; W Hu; W K Joklik
Journal:  Proc Natl Acad Sci U S A       Date:  1984-11       Impact factor: 11.205

6.  Parallel thermodynamic analysis of duplexes on oligodeoxyribonucleotide microchips.

Authors:  A V Fotin; A L Drobyshev; D Y Proudnikov; A N Perov; A D Mirzabekov
Journal:  Nucleic Acids Res       Date:  1998-03-15       Impact factor: 16.971

7.  Isolation and properties of the causal agent of a new variola-like disease (monkeypox) in man.

Authors:  S S Marennikova; E M Seluhina; N N Mal'ceva; K L Cimiskjan; G R Macevic
Journal:  Bull World Health Organ       Date:  1972       Impact factor: 9.408

8.  PCR strategy for identification and differentiation of small pox and other orthopoxviruses.

Authors:  S L Ropp; Q Jin; J C Knight; R F Massung; J J Esposito
Journal:  J Clin Microbiol       Date:  1995-08       Impact factor: 5.948

9.  Cowpox virus contains two copies of an early gene encoding a soluble secreted form of the type II TNF receptor.

Authors:  F Q Hu; C A Smith; D J Pickup
Journal:  Virology       Date:  1994-10       Impact factor: 3.616

10.  Animal poxviruses transmitted from cat to man: current event with lethal end.

Authors:  C P Czerny; A M Eis-Hübinger; A Mayr; K E Schneweis; B Pfeiff
Journal:  Zentralbl Veterinarmed B       Date:  1991-08
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  21 in total

1.  Detection of smallpox virus DNA by LightCycler PCR.

Authors:  Mark J Espy; Franklin R Cockerill III; Richard F Meyer; Michael D Bowen; Gregory A Poland; Ted L Hadfield; Thomas F Smith
Journal:  J Clin Microbiol       Date:  2002-06       Impact factor: 5.948

2.  Rapid detection of intestinal pathogens in fecal samples by an improved reverse dot blot method.

Authors:  Jian-Ming Xing; Su Zhang; Ying Du; Dan Bi; Li-Hui Yao
Journal:  World J Gastroenterol       Date:  2009-05-28       Impact factor: 5.742

3.  Development of a DNA microarray for detection and identification of fungal pathogens involved in invasive mycoses.

Authors:  Dirk M Leinberger; Ulrike Schumacher; Ingo B Autenrieth; Till T Bachmann
Journal:  J Clin Microbiol       Date:  2005-10       Impact factor: 5.948

4.  Use of internally controlled real-time genome amplification for detection of variola virus and other orthopoxviruses infecting humans.

Authors:  C G Fedele; A Negredo; F Molero; M P Sánchez-Seco; A Tenorio
Journal:  J Clin Microbiol       Date:  2006-10-25       Impact factor: 5.948

5.  Use of resequencing oligonucleotide microarrays for identification of Streptococcus pyogenes and associated antibiotic resistance determinants.

Authors:  Louis Davignon; Elizabeth A Walter; Kate M Mueller; Christopher P Barrozo; David A Stenger; Baochuan Lin
Journal:  J Clin Microbiol       Date:  2005-11       Impact factor: 5.948

6.  GeneChip resequencing of the smallpox virus genome can identify novel strains: a biodefense application.

Authors:  Irshad M Sulaiman; Kevin Tang; John Osborne; Scott Sammons; Robert M Wohlhueter
Journal:  J Clin Microbiol       Date:  2006-12-20       Impact factor: 5.948

7.  Use of oligonucleotide microarrays for rapid detection and serotyping of acute respiratory disease-associated adenoviruses.

Authors:  Baochuan Lin; Gary J Vora; Dzung Thach; Elizabeth Walter; David Metzgar; Clark Tibbetts; David A Stenger
Journal:  J Clin Microbiol       Date:  2004-07       Impact factor: 5.948

8.  Diversity of human immunodeficiency virus type 1 subtype A and CRF03_AB protease in Eastern Europe: selection of the V77I variant and its rapid spread in injecting drug user populations.

Authors:  Nikita I Roudinskii; Anna L Sukhanova; Elena V Kazennova; Jonathan N Weber; Vadim V Pokrovsky; Vladimir M Mikhailovich; Aleksei F Bobkov
Journal:  J Virol       Date:  2004-10       Impact factor: 5.103

9.  Real-time PCR system for detection of orthopoxviruses and simultaneous identification of smallpox virus.

Authors:  Victoria A Olson; Thomas Laue; Miriam T Laker; Igor V Babkin; Christian Drosten; Sergei N Shchelkunov; Matthias Niedrig; Inger K Damon; Hermann Meyer
Journal:  J Clin Microbiol       Date:  2004-05       Impact factor: 5.948

10.  Microarray analysis of evolution of RNA viruses: evidence of circulation of virulent highly divergent vaccine-derived polioviruses.

Authors:  Elena Cherkasova; Majid Laassri; Vladimir Chizhikov; Ekaterina Korotkova; Eugenia Dragunsky; Vadim I Agol; Konstantin Chumakov
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-23       Impact factor: 11.205
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