Literature DB >> 11867080

Sharpening spots: correcting for bleedover in cDNA array images.

Terry Therneau1, Renee C Tschumper, Diane Jelinek.   

Abstract

For cDNA array methods that depend on imaging of a radiolabel, we show that bleedover of one spot onto another, due to the gap between the array and the imaging media, can be a major problem. The images can be sharpened, however, using a blind convolution method based on the EM algorithm. The sharpened images look like a set of donuts, which concurs with our knowledge of the spotting process. Oversharpened images are actually useful as well, in locating the centers of each spot.

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Year:  2002        PMID: 11867080     DOI: 10.1016/s0025-5564(01)00101-8

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  2 in total

1.  Improving DNA array data quality by minimising 'neighbourhood' effects.

Authors:  Andreas W Machl; Christoph Schaab; Igor Ivanov
Journal:  Nucleic Acids Res       Date:  2002-11-15       Impact factor: 16.971

2.  Feature extraction and signal processing for nylon DNA microarrays.

Authors:  F Lopez; J Rougemont; B Loriod; A Bourgeois; L Loï; F Bertucci; P Hingamp; R Houlgatte; S Granjeaud
Journal:  BMC Genomics       Date:  2004-06-29       Impact factor: 3.969

  2 in total

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