Literature DB >> 11863867

Misfolded loops decrease the effective rate of DNA hairpin formation.

A Ansari, Y Shen, S V Kuznetsov.   

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Year:  2002        PMID： 11863867     DOI： 10.1103/PhysRevLett.88.069801

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN： 0031-9007            Impact factor:   9.161


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  11 in total

1.  Single-strand stacking free energy from DNA beacon kinetics.

Authors:  Daniel P Aalberts; John M Parman; Noel L Goddard
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

Review 2.  Force as a useful variable in reactions: unfolding RNA.

Authors:  Ignacio Tinoco
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

3.  A kinetic zipper model with intrachain interactions applied to nucleic acid hairpin folding kinetics.

Authors:  Serguei V Kuznetsov; Anjum Ansari
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

4.  Modeling DNA beacons at the mesoscopic scale.

Authors:  J Errami; M Peyrard; N Theodorakopoulos
Journal:  Eur Phys J E Soft Matter       Date:  2007-08-29       Impact factor: 1.890

5.  DNA energy landscapes via calorimetric detection of microstate ensembles of metastable macrostates and triplet repeat diseases.

Authors:  Jens Völker; Horst H Klump; Kenneth J Breslauer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-17       Impact factor: 11.205

6.  Conformational energetics of stable and metastable states formed by DNA triplet repeat oligonucleotides: implications for triplet expansion diseases.

Authors:  J Völker; N Makube; G E Plum; H H Klump; K J Breslauer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-04       Impact factor: 11.205

7.  Impact of bulge loop size on DNA triplet repeat domains: Implications for DNA repair and expansion.

Authors:  Jens Völker; G Eric Plum; Vera Gindikin; Horst H Klump; Kenneth J Breslauer
Journal:  Biopolymers       Date:  2014-01       Impact factor: 2.505

8.  Thermodynamics of loop formation in the denatured state of rhodopseudomonas palustris cytochrome c': scaling exponents and the reconciliation problem.

Authors:  K Sudhindra Rao; Franco O Tzul; Arwen K Christian; Tia N Gordon; Bruce E Bowler
Journal:  J Mol Biol       Date:  2009-08-06       Impact factor: 5.469

9.  The initial step of DNA hairpin folding: a kinetic analysis using fluorescence correlation spectroscopy.

Authors:  Jiho Kim; Sören Doose; Hannes Neuweiler; Markus Sauer
Journal:  Nucleic Acids Res       Date:  2006-05-10       Impact factor: 16.971

10.  Structural parameters affecting the kinetics of RNA hairpin formation.

Authors:  J H A Nagel; C Flamm; I L Hofacker; K Franke; M H de Smit; P Schuster; C W A Pleij
Journal:  Nucleic Acids Res       Date:  2006-07-19       Impact factor: 16.971
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