Literature DB >> 11863617

Occam factors and model independent Bayesian learning of continuous distributions.

Ilya Nemenman1, William Bialek.   

Abstract

Learning of a smooth but nonparametric probability density can be regularized using methods of quantum field theory. We implement a field theoretic prior numerically, test its efficacy, and show that the data and the phase space factors arising from the integration over the model space determine the free parameter of the theory ("smoothness scale") self-consistently. This persists even for distributions that are atypical in the prior and is a step towards a model independent theory for learning continuous distributions. Finally, we point out that a wrong parametrization of a model family may sometimes be advantageous for small data sets.

Year:  2002        PMID: 11863617     DOI: 10.1103/PhysRevE.65.026137

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  9 in total

1.  Bayesian Uncertainty Quantification for Bond Energies and Mobilities Using Path Integral Analysis.

Authors:  Joshua C Chang; Pak-Wing Fok; Tom Chou
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

2.  A characterization of the time-rescaled gamma process as a model for spike trains.

Authors:  Takeaki Shimokawa; Shinsuke Koyama; Shigeru Shinomoto
Journal:  J Comput Neurosci       Date:  2009-10-21       Impact factor: 1.621

3.  Information transduction capacity of noisy biochemical signaling networks.

Authors:  Raymond Cheong; Alex Rhee; Chiaochun Joanne Wang; Ilya Nemenman; Andre Levchenko
Journal:  Science       Date:  2011-09-15       Impact factor: 47.728

4.  Field-theoretic density estimation for biological sequence space with applications to 5' splice site diversity and aneuploidy in cancer.

Authors:  Wei-Chia Chen; Juannan Zhou; Jason M Sheltzer; Justin B Kinney; David M McCandlish
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-05       Impact factor: 11.205

5.  Encoding uncertainty in the hippocampus.

Authors:  L M Harrison; A Duggins; K J Friston
Journal:  Neural Netw       Date:  2006-03-09

6.  Density Estimation on Small Data Sets.

Authors:  Wei-Chia Chen; Ammar Tareen; Justin B Kinney
Journal:  Phys Rev Lett       Date:  2018-10-19       Impact factor: 9.185

7.  Stereotypical Escape Behavior in Caenorhabditis elegans Allows Quantification of Effective Heat Stimulus Level.

Authors:  Kawai Leung; Aylia Mohammadi; William S Ryu; Ilya Nemenman
Journal:  PLoS Comput Biol       Date:  2016-12-27       Impact factor: 4.475

8.  Neural coding of natural stimuli: information at sub-millisecond resolution.

Authors:  Ilya Nemenman; Geoffrey D Lewen; William Bialek; Rob R de Ruyter van Steveninck
Journal:  PLoS Comput Biol       Date:  2008-03-07       Impact factor: 4.475

9.  Adaptive Compaction Construction Simulation Based on Bayesian Field Theory.

Authors:  Jun Zhang; Jia Yu; Tao Guan; Jiajun Wang; Dawei Tong; Binping Wu
Journal:  Sensors (Basel)       Date:  2020-09-10       Impact factor: 3.576

  9 in total

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