Literature DB >> 11861895

Site-specific amino acid replacement matrices from structurally constrained protein evolution simulations.

María Silvina Fornasari, Gustavo Parisi, Julian Echave.   

Abstract

Mesh：

Substances：

Year:  2002        PMID： 11861895     DOI： 10.1093/oxfordjournals.molbev.a004089

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN： 0737-4038            Impact factor:   16.240


× No keyword cloud information.
  15 in total

1.  Exploring the common dynamics of homologous proteins. Application to the globin family.

Authors:  Sandra Maguid; Sebastian Fernandez-Alberti; Leticia Ferrelli; Julian Echave
Journal:  Biophys J       Date:  2005-03-04       Impact factor: 4.033

2.  Testing for spatial clustering of amino acid replacements within protein tertiary structure.

Authors:  Jiaye Yu; Jeffrey L Thorne
Journal:  J Mol Evol       Date:  2006-04-25       Impact factor: 2.395

3.  Mutational effects on stability are largely conserved during protein evolution.

Authors:  Orr Ashenberg; L Ian Gong; Jesse D Bloom
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

4.  Maximum-Likelihood Phylogenetic Inference with Selection on Protein Folding Stability.

Authors:  Miguel Arenas; Agustin Sánchez-Cobos; Ugo Bastolla
Journal:  Mol Biol Evol       Date:  2015-04-02       Impact factor: 16.240

5.  Directionality in the evolution of influenza A haemagglutinin.

Authors:  Sergey Kryazhimskiy; Georgii A Bazykin; Joshua B Plotkin; Joshua Plotkin; Jonathan Dushoff
Journal:  Proc Biol Sci       Date:  2008-11-07       Impact factor: 5.349

Review 6.  Biophysical Models of Protein Evolution: Understanding the Patterns of Evolutionary Sequence Divergence.

Authors:  Julian Echave; Claus O Wilke
Journal:  Annu Rev Biophys       Date:  2017-03-15       Impact factor: 12.981

7.  Prevalence of epistasis in the evolution of influenza A surface proteins.

Authors:  Sergey Kryazhimskiy; Jonathan Dushoff; Georgii A Bazykin; Joshua B Plotkin
Journal:  PLoS Genet       Date:  2011-02-17       Impact factor: 5.917

8.  A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank.

Authors:  Ugo Bastolla; Markus Porto; H Eduardo Roman; Michele Vendruscolo
Journal:  BMC Evol Biol       Date:  2006-05-31       Impact factor: 3.260

9.  Inferring stabilizing mutations from protein phylogenies: application to influenza hemagglutinin.

Authors:  Jesse D Bloom; Matthew J Glassman
Journal:  PLoS Comput Biol       Date:  2009-04-17       Impact factor: 4.475

10.  BeEP Server: Using evolutionary information for quality assessment of protein structure models.

Authors:  Nicolas Palopoli; Esteban Lanzarotti; Gustavo Parisi
Journal:  Nucleic Acids Res       Date:  2013-05-31       Impact factor: 16.971
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.