Literature DB >> 11856615

How can we deliver the large plant genomes? Strategies and perspectives.

Klaus Mayer1, Hans-Werner Mewes.   

Abstract

The first sequenced plant genome, from the small mustard plant Arabidopsis thaliana, was published at the end of 2000. The sequencing of the rice genome is well under way. The sizes of plant genomes vary by a factor of up to 1000, and many important crop plants have genomes that are several times larger than the human genome. To gain insight into the gene toolbox of plant species, numerous large-scale EST sequencing projects have been launched successfully, and analysis procedures are constantly being refined to add maximum value to the sequence data. In addition, an alternative approach to exclude repetitive noncoding DNA and to enrich sequence libraries for gene-containing genomic regions has been developed. This strategy has the potential to deliver information about both genes and regulatory regions outside the transcribed regions.

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Year:  2002        PMID: 11856615     DOI: 10.1016/s1369-5266(02)00235-2

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  11 in total

1.  Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley.

Authors:  Fusheng Wei; Rod A Wing; Roger P Wise
Journal:  Plant Cell       Date:  2002-08       Impact factor: 11.277

Review 2.  Flow cytogenetics and plant genome mapping.

Authors:  Jaroslav Dolezel; Marie Kubaláková; Jan Bartos; Jirí Macas
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

Review 3.  Paths toward algal genomics.

Authors:  Arthur R Grossman
Journal:  Plant Physiol       Date:  2005-02       Impact factor: 8.340

4.  Dissection of the nuclear genome of barley by chromosome flow sorting.

Authors:  Pavla Suchánková; Marie Kubaláková; Pavlína Kovárová; Jan Bartos; Jarmila Cíhalíková; Márta Molnár-Láng; Takashi R Endo; Jaroslav Dolezel
Journal:  Theor Appl Genet       Date:  2006-06-30       Impact factor: 5.699

5.  An improved method to identify BAC clones using pooled overgos.

Authors:  Kavitha Madishetty; Pascal Condamine; Jan T Svensson; Edmundo Rodriguez; Timothy J Close
Journal:  Nucleic Acids Res       Date:  2006-12-06       Impact factor: 16.971

6.  ESTimating plant phylogeny: lessons from partitioning.

Authors:  Jose E B de la Torre; Mary G Egan; Manpreet S Katari; Eric D Brenner; Dennis W Stevenson; Gloria M Coruzzi; Rob DeSalle
Journal:  BMC Evol Biol       Date:  2006-06-15       Impact factor: 3.260

7.  The Genomes of Oryza sativa: a history of duplications.

Authors:  Jun Yu; Jun Wang; Wei Lin; Songgang Li; Heng Li; Jun Zhou; Peixiang Ni; Wei Dong; Songnian Hu; Changqing Zeng; Jianguo Zhang; Yong Zhang; Ruiqiang Li; Zuyuan Xu; Shengting Li; Xianran Li; Hongkun Zheng; Lijuan Cong; Liang Lin; Jianning Yin; Jianing Geng; Guangyuan Li; Jianping Shi; Juan Liu; Hong Lv; Jun Li; Jing Wang; Yajun Deng; Longhua Ran; Xiaoli Shi; Xiyin Wang; Qingfa Wu; Changfeng Li; Xiaoyu Ren; Jingqiang Wang; Xiaoling Wang; Dawei Li; Dongyuan Liu; Xiaowei Zhang; Zhendong Ji; Wenming Zhao; Yongqiao Sun; Zhenpeng Zhang; Jingyue Bao; Yujun Han; Lingli Dong; Jia Ji; Peng Chen; Shuming Wu; Jinsong Liu; Ying Xiao; Dongbo Bu; Jianlong Tan; Li Yang; Chen Ye; Jingfen Zhang; Jingyi Xu; Yan Zhou; Yingpu Yu; Bing Zhang; Shulin Zhuang; Haibin Wei; Bin Liu; Meng Lei; Hong Yu; Yuanzhe Li; Hao Xu; Shulin Wei; Ximiao He; Lijun Fang; Zengjin Zhang; Yunze Zhang; Xiangang Huang; Zhixi Su; Wei Tong; Jinhong Li; Zongzhong Tong; Shuangli Li; Jia Ye; Lishun Wang; Lin Fang; Tingting Lei; Chen Chen; Huan Chen; Zhao Xu; Haihong Li; Haiyan Huang; Feng Zhang; Huayong Xu; Na Li; Caifeng Zhao; Shuting Li; Lijun Dong; Yanqing Huang; Long Li; Yan Xi; Qiuhui Qi; Wenjie Li; Bo Zhang; Wei Hu; Yanling Zhang; Xiangjun Tian; Yongzhi Jiao; Xiaohu Liang; Jiao Jin; Lei Gao; Weimou Zheng; Bailin Hao; Siqi Liu; Wen Wang; Longping Yuan; Mengliang Cao; Jason McDermott; Ram Samudrala; Jian Wang; Gane Ka-Shu Wong; Huanming Yang
Journal:  PLoS Biol       Date:  2005-02-01       Impact factor: 8.029

8.  The PlaNet Consortium: a network of European plant databases connecting plant genome data in an integrated biological knowledge resource.

Authors:  H Schoof; R Ernst; K F X Mayer
Journal:  Comp Funct Genomics       Date:  2004

9.  The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data.

Authors:  Jose Eduardo de la Torre-Bárcena; Sergios-Orestis Kolokotronis; Ernest K Lee; Dennis Wm Stevenson; Eric D Brenner; Manpreet S Katari; Gloria M Coruzzi; Rob DeSalle
Journal:  PLoS One       Date:  2009-06-02       Impact factor: 3.240

10.  Expressed sequence tag analysis in Cycas, the most primitive living seed plant.

Authors:  Eric D Brenner; Dennis W Stevenson; Richard W McCombie; Manpreet S Katari; Stephen A Rudd; Klaus F X Mayer; Peter M Palenchar; Suzan J Runko; Richard W Twigg; Guangwei Dai; Rob A Martienssen; Phillip N Benfey; Gloria M Coruzzi
Journal:  Genome Biol       Date:  2003-11-18       Impact factor: 13.583

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