Literature DB >> 11854489

Forced engagement of a RNA/protein complex by a chemical inducer of dimerization to modulate gene expression.

Isabelle Harvey1, Philippe Garneau, Jerry Pelletier.   

Abstract

A general strategy is described for forcing the engagement of an RNA/protein complex by using small-molecule ligands. A bivalent molecule was created by linking a protein-binding ligand to an RNA-binding ligand. On presentation of the chemical inducer of dimerization to the RNA by the protein, cooperative binding ensued, resulting in higher-affinity complexes. When the chemical inducer of dimerization was used to target the protein to an mRNA template, the resulting RNA/protein complex was sufficiently stable to inhibit mRNA translation. This approach provides a logic to modulate gene expression by using small-molecule ligands to recruit protein surfaces to mRNAs.

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Year:  2002        PMID: 11854489      PMCID: PMC122288          DOI: 10.1073/pnas.042693399

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

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Authors:  G R Crabtree; S L Schreiber
Journal:  Trends Biochem Sci       Date:  1996-11       Impact factor: 13.807

2.  Structural basis of the RNA-binding specificity of human U1A protein.

Authors:  F H Allain; P W Howe; D Neuhaus; G Varani
Journal:  EMBO J       Date:  1997-09-15       Impact factor: 11.598

3.  NMR structure of the bacteriophage lambda N peptide/boxB RNA complex: recognition of a GNRA fold by an arginine-rich motif.

Authors:  P Legault; J Li; J Mogridge; L E Kay; J Greenblatt
Journal:  Cell       Date:  1998-04-17       Impact factor: 41.582

4.  Proteins binding to 5' untranslated region sites: a general mechanism for translational regulation of mRNAs in human and yeast cells.

Authors:  R Stripecke; C C Oliveira; J E McCarthy; M W Hentze
Journal:  Mol Cell Biol       Date:  1994-09       Impact factor: 4.272

5.  Specific binding of aminoglycoside antibiotics to RNA.

Authors:  Y Wang; R R Rando
Journal:  Chem Biol       Date:  1995-05

6.  The binding site of a specific aminoglycoside binding RNA molecule.

Authors:  J Cho; K Hamasaki; R R Rando
Journal:  Biochemistry       Date:  1998-04-07       Impact factor: 3.162

7.  Structure of the FKBP12-rapamycin complex interacting with the binding domain of human FRAP.

Authors:  J Choi; J Chen; S L Schreiber; J Clardy
Journal:  Science       Date:  1996-07-12       Impact factor: 47.728

8.  Saccharide-RNA recognition in an aminoglycoside antibiotic-RNA aptamer complex.

Authors:  L Jiang; A K Suri; R Fiala; D J Patel
Journal:  Chem Biol       Date:  1997-01

9.  RNA molecules that specifically and stoichiometrically bind aminoglycoside antibiotics with high affinities.

Authors:  Y Wang; J Killian; K Hamasaki; R R Rando
Journal:  Biochemistry       Date:  1996-09-24       Impact factor: 3.162

10.  Iron regulatory protein prevents binding of the 43S translation pre-initiation complex to ferritin and eALAS mRNAs.

Authors:  N K Gray; M W Hentze
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

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  8 in total

1.  An upstream open reading frame impedes translation of the huntingtin gene.

Authors:  Joseph Lee; Eun Hee Park; Graeme Couture; Isabelle Harvey; Philippe Garneau; Jerry Pelletier
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

2.  The KH domains of Xenopus Vg1RBP mediate RNA binding and self-association.

Authors:  Anna Git; Nancy Standart
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

3.  Inhibition of protein synthesis by aminoglycoside-arginine conjugates.

Authors:  Marjolaine Carriere; Veerappan Vijayabaskar; Drew Applefield; Isabelle Harvey; Philippe Garneau; Jon Lorsch; Aviva Lapidot; Jerry Pelletier
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

4.  Inhibitors of protein synthesis identified by a high throughput multiplexed translation screen.

Authors:  Olivia Novac; Anne-Sophie Guenier; Jerry Pelletier
Journal:  Nucleic Acids Res       Date:  2004-02-09       Impact factor: 16.971

5.  Eukaryotic protein synthesis inhibitors identified by comparison of cytotoxicity profiles.

Authors:  Jenny Chan; Shakila N Khan; Isabelle Harvey; William Merrick; Jerry Pelletier
Journal:  RNA       Date:  2004-03       Impact factor: 4.942

6.  The up-regulation of ferritin expression using a small-molecule ligand to the native mRNA.

Authors:  Jennifer D Tibodeau; Paige M Fox; Patricia A Ropp; Elizabeth C Theil; H Holden Thorp
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-28       Impact factor: 11.205

7.  Direct and specific chemical control of eukaryotic translation with a synthetic RNA-protein interaction.

Authors:  Stephen J Goldfless; Brian J Belmont; Alexandra M de Paz; Jessica F Liu; Jacquin C Niles
Journal:  Nucleic Acids Res       Date:  2012-01-24       Impact factor: 16.971

8.  In vitro selection of RNA aptamers against a composite small molecule-protein surface.

Authors:  Kelly A Plummer; James M Carothers; Masahiro Yoshimura; Jack W Szostak; Gregory L Verdine
Journal:  Nucleic Acids Res       Date:  2005-09-30       Impact factor: 16.971

  8 in total

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