Literature DB >> 11854482

Optimizing bioconversion pathways through systems analysis and metabolic engineering.

Daniel E Stafford1, Kurt S Yanagimachi, Philip A Lessard, Sushil K Rijhwani, Anthony J Sinskey, Gregory Stephanopoulos.   

Abstract

We demonstrate a general approach for metabolic engineering of biocatalytic systems comprising the uses of a chemostat for strain improvement and radioisotopic tracers for the quantification of pathway fluxes. Flux determination allows the identification of target pathways for modification as validated by subsequent overexpression of the corresponding gene. We demonstrate this method in the indene bioconversion network of Rhodococcus modified for the overproduction of 1,2-indandiol, a key precursor for the AIDS drug Crixivan.

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Year:  2002        PMID: 11854482      PMCID: PMC122274          DOI: 10.1073/pnas.032681699

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  11 in total

Review 1.  Metabolic fluxes and metabolic engineering.

Authors:  G Stephanopoulos
Journal:  Metab Eng       Date:  1999-01       Impact factor: 9.783

2.  Rhodococcus erythropolis DCL14 contains a novel degradation pathway for limonene.

Authors:  M J van der Werf; H J Swarts; J A de Bont
Journal:  Appl Environ Microbiol       Date:  1999-05       Impact factor: 4.792

3.  Microbial conversion of indene to indandiol: a key intermediate in the synthesis of CRIXIVAN.

Authors:  B C Buckland; S W Drew; N C Connors; M M Chartrain; C Lee; P M Salmon; K Gbewonyo; W Zhou; P Gailliot; R Singhvi; R C Olewinski; W J Sun; J Reddy; J Zhang; B A Jackey; C Taylor; K E Goklen; B Junker; R L Greasham
Journal:  Metab Eng       Date:  1999-01       Impact factor: 9.783

Review 4.  Toward a science of metabolic engineering.

Authors:  J E Bailey
Journal:  Science       Date:  1991-06-21       Impact factor: 47.728

Review 5.  Metabolic engineering of indene bioconversion in Rhodococcus sp.

Authors:  D E Stafford; K S Yanagimachi; G Stephanopoulos
Journal:  Adv Biochem Eng Biotechnol       Date:  2001       Impact factor: 2.635

6.  Production of enantiopure styrene oxide by recombinant Escherichia coli synthesizing a two-component styrene monooxygenase.

Authors:  S Panke; M G Wubbolts; A Schmid; B Witholt
Journal:  Biotechnol Bioeng       Date:  2000-07-05       Impact factor: 4.530

7.  Application of radiolabeled tracers to biocatalytic flux analysis.

Authors:  K S Yanagimachi; D E Stafford; A F Dexter; A J Sinskey; S Drew; G Stephanopoulos
Journal:  Eur J Biochem       Date:  2001-09

8.  Isolation and characterization of indene bioconversion genes from Rhodococcus strain I24.

Authors:  S L Treadway; K S Yanagimachi; E Lankenau; P A Lessard; G Stephanopoulos; A J Sinskey
Journal:  Appl Microbiol Biotechnol       Date:  1999-06       Impact factor: 4.813

9.  The Rhodococcus erythropolis DCL14 limonene-1,2-epoxide hydrolase gene encodes an enzyme belonging to a novel class of epoxide hydrolases.

Authors:  F Barbirato; J C Verdoes; J A de Bont; M J van der Werf
Journal:  FEBS Lett       Date:  1998-11-06       Impact factor: 4.124

10.  Limonene-1,2-epoxide hydrolase from Rhodococcus erythropolis DCL14 belongs to a novel class of epoxide hydrolases.

Authors:  M J van der Werf; K M Overkamp; J A de Bont
Journal:  J Bacteriol       Date:  1998-10       Impact factor: 3.490

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  4 in total

1.  Soft constraints-based multiobjective framework for flux balance analysis.

Authors:  Deepak Nagrath; Marco Avila-Elchiver; François Berthiaume; Arno W Tilles; Achille Messac; Martin L Yarmush
Journal:  Metab Eng       Date:  2010-05-27       Impact factor: 9.783

2.  Novel redox potential-based screening strategy for rapid isolation of Klebsiella pneumoniae mutants with enhanced 1,3-propanediol-producing capability.

Authors:  Chenyu Du; Yanping Zhang; Yin Li; Zhu'an Cao
Journal:  Appl Environ Microbiol       Date:  2007-05-18       Impact factor: 4.792

Review 3.  Mathematical models of cell factories: moving towards the core of industrial biotechnology.

Authors:  Marija Cvijovic; Sergio Bordel; Jens Nielsen
Journal:  Microb Biotechnol       Date:  2010-12-08       Impact factor: 5.813

Review 4.  Rhodococcus as A Versatile Biocatalyst in Organic Synthesis.

Authors:  Hanna Busch; Peter-Leon Hagedoorn; Ulf Hanefeld
Journal:  Int J Mol Sci       Date:  2019-09-26       Impact factor: 5.923

  4 in total

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