Literature DB >> 11853762

Mouse eye gene microarrays for investigating ocular development and disease.

Rafal Farjo1, Jindan Yu, Mohammad I Othman, Shigeo Yoshida, Sujata Sheth, Tom Glaser, Wolfgang Baehr, Anand Swaroop.   

Abstract

Microarray technology can facilitate simultaneous expression analysis of thousands of genes and assist in delineating cellular pathways involved in development or disease pathogenesis. Since public databases and commercial cDNA microarrays have an under-representation of eye-expressed genes, we generated over 3000 expressed sequence tags from three unamplified mouse eye/retina cDNA libraries. These eye-expressed genes were used to produce cDNA microarrays. Methodology for printing of slides, hybridization, scanning and data analysis has been optimized. The I-gene microarrays will be useful for establishing expression profiles of the mouse eye/retina and provide a resource for defining molecular pathways involved in development, aging and disease.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 11853762     DOI: 10.1016/s0042-6989(01)00219-x

Source DB:  PubMed          Journal:  Vision Res        ISSN: 0042-6989            Impact factor:   1.886


  12 in total

1.  Transcriptional profile analysis of RPGRORF15 frameshift mutation identifies novel genes associated with retinal degeneration.

Authors:  Sem Genini; Barbara Zangerl; Julianna Slavik; Gregory M Acland; William A Beltran; Gustavo D Aguirre
Journal:  Invest Ophthalmol Vis Sci       Date:  2010-06-23       Impact factor: 4.799

Review 2.  Vision from next generation sequencing: multi-dimensional genome-wide analysis for producing gene regulatory networks underlying retinal development, aging and disease.

Authors:  Hyun-Jin Yang; Rinki Ratnapriya; Tiziana Cogliati; Jung-Woong Kim; Anand Swaroop
Journal:  Prog Retin Eye Res       Date:  2015-02-07       Impact factor: 21.198

3.  Electroporation and RNA interference in the rodent retina in vivo and in vitro.

Authors:  Takahiko Matsuda; Constance L Cepko
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-05       Impact factor: 11.205

4.  Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple development stages in eye tissues.

Authors:  Gungor Budak; Soma Dash; Rajneesh Srivastava; Salil A Lachke; Sarath Chandra Janga
Journal:  Exp Eye Res       Date:  2018-01-11       Impact factor: 3.467

Review 5.  Transcriptome analysis of the retina.

Authors:  Anand Swaroop; Donald J Zack
Journal:  Genome Biol       Date:  2002-07-30       Impact factor: 13.583

6.  Stage and gene specific signatures defined by histones H3K4me2 and H3K27me3 accompany mammalian retina maturation in vivo.

Authors:  Evgenya Y Popova; Xuming Xu; Andrew T DeWan; Anna C Salzberg; Arthur Berg; Josephine Hoh; Samuel S Zhang; Colin J Barnstable
Journal:  PLoS One       Date:  2012-10-09       Impact factor: 3.240

7.  A biphasic pattern of gene expression during mouse retina development.

Authors:  Samuel Shao-Min Zhang; Xuming Xu; Mu-Gen Liu; Hongyu Zhao; Marcelo Bento Soares; Colin J Barnstable; Xin-Yuan Fu
Journal:  BMC Dev Biol       Date:  2006-10-17       Impact factor: 1.978

8.  Gene expression patterns in hypoxic and post-hypoxic adult rat retina with special reference to the NMDA receptor and its interactome.

Authors:  Lori Ann Crosson; Roger A Kroes; Joseph R Moskal; Robert A Linsenmeier
Journal:  Mol Vis       Date:  2009-02-09       Impact factor: 2.367

9.  Annotation and analysis of 10,000 expressed sequence tags from developing mouse eye and adult retina.

Authors:  Jindan Yu; Rafal Farjo; Sean P MacNee; Wolfgang Baehr; Dwight E Stambolian; Anand Swaroop
Journal:  Genome Biol       Date:  2003-09-22       Impact factor: 13.583

10.  Microarray and morphological analysis of early postnatal CRB2 mutant retinas on a pure C57BL/6J genetic background.

Authors:  Celso Henrique Alves; Koen Bossers; Rogier M Vos; Anke H W Essing; Sigrid Swagemakers; Peter J van der Spek; Joost Verhaagen; Jan Wijnholds
Journal:  PLoS One       Date:  2013-12-06       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.