Literature DB >> 11853419

A theoretical study of beta-sheet models: is the formation of hydrogen-bond networks cooperative?

Yi-Lei Zhao1, Yun-Dong Wu.   

Abstract

The cooperativity in terms of enthalpy contribution for beta-sheet formation of polyglycine models in a vacuum has been studied theoretically by using a repeating unit approach. No cooperativity is found in the parallel direction for both the parallel and antiparallel beta-sheets. Cooperativity in the perpendicular direction is dependent upon the residue number (m) in each beta-strand. While there is large cooperativity in the acetamide hydrogen-bond chain (m = 0), the cooperativity is not large in beta-sheet networks (m > 0). SCIPCM solvent model calculations also significantly reduce the cooperativity in hydrogen-bond chains. It is concluded that cooperativity is mainly due to long-range electrostatic interactions and not due to the resonance effect.

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Year:  2002        PMID: 11853419     DOI: 10.1021/ja016230a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  20 in total

1.  Hydrophobic cooperativity as a mechanism for amyloid nucleation.

Authors:  Ronald D Hills; Charles L Brooks
Journal:  J Mol Biol       Date:  2007-02-24       Impact factor: 5.469

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Authors:  Shuai Niu; Brandon T Ruotolo
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

3.  Comparison of some dispersion-corrected and traditional functionals as applied to peptides and conformations of cyclohexane derivatives.

Authors:  Mateusz Marianski; Amparo Asensio; J J Dannenberg
Journal:  J Chem Phys       Date:  2012-07-28       Impact factor: 3.488

4.  Aggregation of capped hexaglycine strands into hydrogen-bonding motifs representative of pleated and rippled β-sheets, collagen, and polyglycine I and II crystal structures. A density functional theory study.

Authors:  Joshua A Plumley; Midas I-Hsien Tsai; J J Dannenberg
Journal:  J Phys Chem B       Date:  2011-01-25       Impact factor: 2.991

5.  Observation of α-Helical Hydrogen-Bond Cooperativity in an Intact Protein.

Authors:  Jingwen Li; Yefei Wang; Jingfei Chen; Zhijun Liu; Ad Bax; Lishan Yao
Journal:  J Am Chem Soc       Date:  2016-02-08       Impact factor: 15.419

6.  Comparison of β-sheets of capped polyalanine with those of the tau-amyloid structures VQIVYK and VQIINK. A density functional theory study.

Authors:  Joshua A Plumley; J J Dannenberg
Journal:  J Phys Chem B       Date:  2011-08-11       Impact factor: 2.991

7.  The importance of hydrogen bonding between the glutamine side chains to the formation of amyloid VQIVYK parallel beta-sheets: an ONIOM DFT/AM1 study.

Authors:  Joshua A Plumley; J J Dannenberg
Journal:  J Am Chem Soc       Date:  2010-02-17       Impact factor: 15.419

8.  The folding of acetyl(Ala)28NH2 and acetyl(Ala)40NH2 extended strand peptides into antiparallel β-sheets. A density functional theory study of β-sheets with β-turns.

Authors:  Jorge Ali-Torres; J J Dannenberg
Journal:  J Phys Chem B       Date:  2012-11-27       Impact factor: 2.991

9.  Accurate ab Initio Study on the Hydrogen-Bond Pairs in Protein Secondary Structures.

Authors:  Zhi-Xiang Wang; Chun Wu; Hongxing Lei; Yong Duan
Journal:  J Chem Theory Comput       Date:  2007       Impact factor: 6.006

10.  Impact of Strand Number on Parallel β-Sheet Stability.

Authors:  Vanessa M Kung; Gabriel Cornilescu; Samuel H Gellman
Journal:  Angew Chem Int Ed Engl       Date:  2015-10-12       Impact factor: 15.336

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