Literature DB >> 11851427

Concerted and stepwise dehydration mechanisms observed in wild-type and mutated Escherichia coli dTDP-glucose 4,6-dehydratase.

Adrian D Hegeman1, Jeffrey W Gross, Perry A Frey.   

Abstract

The conversion of dTDP-glucose into dTDP-4-keto-6-deoxyglucose by Escherichia coli dTDP-glucose 4,6-dehydratase (4,6-dehydratase) takes place in the active site in three steps: dehydrogenation to dTDP-4-ketoglucose, dehydration to dTDP-4-ketoglucose-5,6-ene, and rereduction of C6 to the methyl group. The 4,6-dehydratase makes use of tightly bound NAD(+) as the coenzyme for transiently oxidizing the substrate, activating it for the dehydration step. Dehydration may occur by either of two mechanisms, enolization of the dTDP-4-ketoglucose intermediate, followed by elimination [as proposed for beta-eliminations by Gerlt, J. A., and Gassman, P. G. (1992) J. Am. Chem. Soc. 114, 5928-5934], or a concerted 5,6-elimination of water from the intermediate. To assign one of these two mechanisms, a simultaneous kinetic characterization of glucosyl C5((1)H/(2)H) solvent hydrogen and C6((16)OH/(18)OH) solvent oxygen exchange was performed using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. The reaction of the wild-type enzyme is shown to proceed through a concerted dehydration mechanism. Interestingly, mutation of Asp135, the acid catalyst, to Asn or Ala alters the mechanism, allowing enolization to occur to varying extents. While aspartic acid 135 is the acid catalyst for dehydration in the wild-type enzyme, the differential enolization capabilities of D135N and D135A dehydratases suggest an additional role for this residue. We postulate that the switch from a concerted to stepwise dehydration mechanism observed in the aspartic acid variants is due to the loss of control over the glucosyl C5-C6 bond rotation in the active site.

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Year:  2002        PMID: 11851427     DOI: 10.1021/bi011748c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  11 in total

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Authors:  Nicole A Webb; Anne M Mulichak; Joseph S Lam; Heather L Rocchetta; R Michael Garavito
Journal:  Protein Sci       Date:  2004-02       Impact factor: 6.725

2.  Structure and function of both domains of ArnA, a dual function decarboxylase and a formyltransferase, involved in 4-amino-4-deoxy-L-arabinose biosynthesis.

Authors:  Gareth J Williams; Steven D Breazeale; Christian R H Raetz; James H Naismith
Journal:  J Biol Chem       Date:  2005-04-04       Impact factor: 5.157

3.  Structure and function of GDP-mannose-3',5'-epimerase: an enzyme which performs three chemical reactions at the same active site.

Authors:  Louise L Major; Beata A Wolucka; James H Naismith
Journal:  J Am Chem Soc       Date:  2005-12-28       Impact factor: 15.419

4.  Biosynthesis of UDP-4-keto-6-deoxyglucose and UDP-rhamnose in pathogenic fungi Magnaporthe grisea and Botryotinia fuckeliana.

Authors:  Viviana Martinez; Miles Ingwers; James Smith; John Glushka; Ting Yang; Maor Bar-Peled
Journal:  J Biol Chem       Date:  2011-11-18       Impact factor: 5.157

5.  Complete 6-deoxy-D-altro-heptose biosynthesis pathway from Campylobacter jejuni: more complex than anticipated.

Authors:  Matthew McCallum; Steven D Shaw; Gary S Shaw; Carole Creuzenet
Journal:  J Biol Chem       Date:  2012-07-11       Impact factor: 5.157

6.  Structural and Biochemical Investigation of PglF from Campylobacter jejuni Reveals a New Mechanism for a Member of the Short Chain Dehydrogenase/Reductase Superfamily.

Authors:  Alexander S Riegert; James B Thoden; Ian C Schoenhofen; David C Watson; N Martin Young; Peter A Tipton; Hazel M Holden
Journal:  Biochemistry       Date:  2017-11-03       Impact factor: 3.162

7.  A bifunctional 3,5-epimerase/4-keto reductase for nucleotide-rhamnose synthesis in Arabidopsis.

Authors:  Gregory Watt; Christine Leoff; April D Harper; Maor Bar-Peled
Journal:  Plant Physiol       Date:  2004-03-12       Impact factor: 8.340

8.  Biochemical analysis of a sugar 4,6-dehydratase from Acanthamoeba polyphaga Mimivirus.

Authors:  Justin D Ferek; James B Thoden; Hazel M Holden
Journal:  Protein Sci       Date:  2020-03-04       Impact factor: 6.725

9.  Heterogeneity of genomic evolution and mutational profiles in multiple myeloma.

Authors:  Niccolo Bolli; Hervé Avet-Loiseau; David C Wedge; Peter Van Loo; Ludmil B Alexandrov; Inigo Martincorena; Kevin J Dawson; Francesco Iorio; Serena Nik-Zainal; Graham R Bignell; Jonathan W Hinton; Yilong Li; Jose M C Tubio; Stuart McLaren; Sarah O' Meara; Adam P Butler; Jon W Teague; Laura Mudie; Elizabeth Anderson; Naim Rashid; Yu-Tzu Tai; Masood A Shammas; Adam S Sperling; Mariateresa Fulciniti; Paul G Richardson; Giovanni Parmigiani; Florence Magrangeas; Stephane Minvielle; Philippe Moreau; Michel Attal; Thierry Facon; P Andrew Futreal; Kenneth C Anderson; Peter J Campbell; Nikhil C Munshi
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

Review 10.  The evolution of enzyme function in the isomerases.

Authors:  Sergio Martinez Cuesta; Nicholas Furnham; Syed Asad Rahman; Ian Sillitoe; Janet M Thornton
Journal:  Curr Opin Struct Biol       Date:  2014-07-05       Impact factor: 6.809

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