Literature DB >> 11851336

Crystal structure of human cytosolic phosphoenolpyruvate carboxykinase reveals a new GTP-binding site.

Pete Dunten1, Charles Belunis, Robert Crowther, Kurt Hollfelder, Ursula Kammlott, Wayne Levin, Hanspeter Michel, Gwendolyn B Ramsey, Amy Swain, David Weber, Stanley J Wertheimer.   

Abstract

We report crystal structures of the human enzyme phosphoenolpyruvate carboxykinase (PEPCK) with and without bound substrates. These structures are the first to be determined for a GTP-dependent PEPCK, and provide the first view of a novel GTP-binding site unique to the GTP-dependent PEPCK family. Three phenylalanine residues form the walls of the guanine-binding pocket on the enzyme's surface and, most surprisingly, one of the phenylalanine side-chains contributes to the enzyme's specificity for GTP. PEPCK catalyzes the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle. Because the gluconeogenic pathway contributes to the fasting hyperglycemia of type II diabetes, inhibitors of PEPCK may be useful in the treatment of diabetes. Copyright 2002 Elsevier Science Ltd.

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Year:  2002        PMID: 11851336     DOI: 10.1006/jmbi.2001.5364

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  17 in total

1.  Increasing the conformational entropy of the Omega-loop lid domain in phosphoenolpyruvate carboxykinase impairs catalysis and decreases catalytic fidelity .

Authors:  Troy A Johnson; Todd Holyoak
Journal:  Biochemistry       Date:  2010-06-29       Impact factor: 3.162

Review 2.  Structural insights into the mechanism of phosphoenolpyruvate carboxykinase catalysis.

Authors:  Gerald M Carlson; Todd Holyoak
Journal:  J Biol Chem       Date:  2009-07-27       Impact factor: 5.157

3.  Thematic minireview series: a perspective on the biology of phosphoenolpyruvate carboxykinase 55 years after its discovery.

Authors:  Richard W Hanson
Journal:  J Biol Chem       Date:  2009-07-27       Impact factor: 5.157

4.  Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection.

Authors:  Sarah M Sullivan; Todd Holyoak
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-04       Impact factor: 11.205

Review 5.  The mitochondrial isoform of phosphoenolpyruvate carboxykinase (PEPCK-M) and glucose homeostasis: has it been overlooked?

Authors:  Romana Stark; Richard G Kibbey
Journal:  Biochim Biophys Acta       Date:  2013-10-28

6.  Saccharomyces cerevisiae phosphoenolpyruvate carboxykinase: the relevance of Glu299 and Leu460 for nucleotide binding.

Authors:  Estela Pérez; Emilio Cardemil
Journal:  Protein J       Date:  2010-07       Impact factor: 2.371

7.  Relevance of phenylalanine 216 in the affinity of Saccharomyces cerevisiae phosphoenolpyruvate carboxykinase for Mn(II).

Authors:  Alejandro Yévenes; Fernando D González-Nilo; Emilio Cardemil
Journal:  Protein J       Date:  2007-02       Impact factor: 2.371

8.  Dynamic behavior of rat phosphoenolpyruvate carboxykinase inhibitors: new mechanism for enzyme inhibition.

Authors:  Mohammad Reza Dayer; Mohammad Saaid Dayer; Omid Ghayour
Journal:  Protein J       Date:  2013-04       Impact factor: 2.371

9.  First characterization of an archaeal GTP-dependent phosphoenolpyruvate carboxykinase from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1.

Authors:  Wakao Fukuda; Toshiaki Fukui; Haruyuki Atomi; Tadayuki Imanaka
Journal:  J Bacteriol       Date:  2004-07       Impact factor: 3.490

10.  Phylogenetic study of the evolution of PEP-carboxykinase.

Authors:  Sanjukta Aich; Louis T J Delbaere
Journal:  Evol Bioinform Online       Date:  2007-12-11       Impact factor: 1.625

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