Literature DB >> 11849948

Synthetic cell biology.

A P Arkin1.   

Abstract

Synthesis of data into formal models of cellular function is rapidly becoming a necessary industry. The complexity of the interactions among cellular constituents and the quantity of data about these interactions hinders the ability to predict how cells will respond to perturbation and how they can be engineered for industrial or medical purposes. Models provide a systematic framework to describe and analyze these complex systems. In the past few years, models have begun to have an impact on mainstream biology by creating deeper insight into the design rules of cellular signal processing, providing a basis for rational engineering of cells, and for resolving debates about the root causes of certain cellular behaviors. This review covers some of the recent work and challenges in developing these "synthetic cell" models and their growing practical applications.

Mesh:

Year:  2001        PMID: 11849948     DOI: 10.1016/s0958-1669(01)00273-7

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  16 in total

1.  Myriad molecules in motion: simulated diffusion as a new tool to study molecular movement and interaction in a living cell.

Authors:  Gerald L Hazelbauer
Journal:  J Bacteriol       Date:  2005-01       Impact factor: 3.490

Review 2.  Systems interface biology.

Authors:  Francis J Doyle; Jörg Stelling
Journal:  J R Soc Interface       Date:  2006-10-22       Impact factor: 4.118

3.  Programming with models: modularity and abstraction provide powerful capabilities for systems biology.

Authors:  Aneil Mallavarapu; Matthew Thomson; Benjamin Ullian; Jeremy Gunawardena
Journal:  J R Soc Interface       Date:  2009-03-06       Impact factor: 4.118

4.  XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes.

Authors:  Michael L Blinov; Ion I Moraru
Journal:  Proc IEEE Int Symp Bioinformatics Bioeng       Date:  2007-11-05

5.  Mathematical modeling and synthetic biology.

Authors:  D Chandran; W B Copeland; S C Sleight; H M Sauro
Journal:  Drug Discov Today Dis Models       Date:  2008

6.  The acute inflammatory response in trauma / hemorrhage and traumatic brain injury: current state and emerging prospects.

Authors:  R Namas; A Ghuma; L Hermus; R Zamora; D O Okonkwo; T R Billiar; Y Vodovotz
Journal:  Libyan J Med       Date:  2009-09-01       Impact factor: 1.657

7.  Introduction of customized inserts for s-treamlined assembly and optimization of BioBrick synthetic genetic circuits.

Authors:  Julie E Norville; Ratmir Derda; Saurabh Gupta; Kelly A Drinkwater; Angela M Belcher; Andres E Leschziner; Thomas F Knight
Journal:  J Biol Eng       Date:  2010-12-20       Impact factor: 4.355

8.  Rule-based spatial modeling with diffusing, geometrically constrained molecules.

Authors:  Gerd Gruenert; Bashar Ibrahim; Thorsten Lenser; Maiko Lohel; Thomas Hinze; Peter Dittrich
Journal:  BMC Bioinformatics       Date:  2010-06-07       Impact factor: 3.169

9.  On the architecture of cell regulation networks.

Authors:  Yueheng Lan; Igor Mezić
Journal:  BMC Syst Biol       Date:  2011-03-02

10.  Rationally designed bidirectional promoter improves the evolutionary stability of synthetic genetic circuits.

Authors:  Song Yang; Sean C Sleight; Herbert M Sauro
Journal:  Nucleic Acids Res       Date:  2012-10-23       Impact factor: 16.971

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