Literature DB >> 11847088

GenomePixelizer--a visualization program for comparative genomics within and between species.

A Kozik1, E Kochetkova, R Michelmore.   

Abstract

GenomePixelizer is a visualization tool that generates custom images of the physical or genetic positions of specified sets of genes in whole genomes or parts of genomes. Multiple sets of genes can be shown simultaneously with user-defined characteristics displayed. It allows the analysis of duplication events within and between species based on sequence similarities. The program is written in Tcl/Tk and works on any platform that supports the Tcl/Tk toolkit. GenomePixelizer generates HTML ImageMap tags for each gene in the image allowing links to databases. Images can be saved and presented on web pages.

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Mesh：

Year:  2002        PMID： 11847088     DOI： 10.1093/bioinformatics/18.2.335

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  29 in total

1.  The carboxylesterase gene family from Arabidopsis thaliana.

Authors:  Sean D G Marshall; Joanna J Putterill; Kim M Plummer; Richard D Newcomb
Journal:  J Mol Evol       Date:  2003-11       Impact factor: 2.395

2.  Information Visualization Techniques in Bioinformatics during the Postgenomic Era.

Authors:  Ying Tao; Yang Liu; Carol Friedman; Yves A Lussier
Journal:  Drug Discov Today Biosilico       Date:  2004-11

3.  Identification and characterization of regions of the rice genome associated with broad-spectrum, quantitative disease resistance.

Authors:  Randall J Wisser; Qi Sun; Scot H Hulbert; Stephen Kresovich; Rebecca J Nelson
Journal:  Genetics       Date:  2005-02-16       Impact factor: 4.562

4.  Selection mapping of loci for quantitative disease resistance in a diverse maize population.

Authors:  Randall J Wisser; Seth C Murray; Judith M Kolkman; Hernán Ceballos; Rebecca J Nelson
Journal:  Genetics       Date:  2008-08-24       Impact factor: 4.562

5.  The rice kinase database. A phylogenomic database for the rice kinome.

Authors:  Christopher Dardick; Johann Chen; Todd Richter; Shu Ouyang; Pamela Ronald
Journal:  Plant Physiol       Date:  2006-12-15       Impact factor: 8.340

6.  Circos: an information aesthetic for comparative genomics.

Authors:  Martin Krzywinski; Jacqueline Schein; Inanç Birol; Joseph Connors; Randy Gascoyne; Doug Horsman; Steven J Jones; Marco A Marra
Journal:  Genome Res       Date:  2009-06-18       Impact factor: 9.043

7.  DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization.

Authors:  Steven B Cannon; Alexander Kozik; Brian Chan; Richard Michelmore; Nevin D Young
Journal:  Genome Biol       Date:  2003-09-19       Impact factor: 13.583

8.  In silico identification and expression analysis of superoxide dismutase (SOD) gene family in Medicago truncatula.

Authors:  Jianbo Song; Liming Zeng; Rongrong Chen; Yihua Wang; Yong Zhou
Journal:  3 Biotech       Date:  2018-07-30       Impact factor: 2.406

9.  Comparative genomic sequence analysis of strawberry and other rosids reveals significant microsynteny.

Authors:  Sook Jung; Ilhyung Cho; Bryon Sosinski; Albert Abbott; Dorrie Main
Journal:  BMC Res Notes       Date:  2010-06-16

10.  The value of avian genomics to the conservation of wildlife.

Authors:  Michael N Romanov; Elaina M Tuttle; Marlys L Houck; William S Modi; Leona G Chemnick; Marisa L Korody; Emily M Stremel Mork; Christie A Otten; Tanya Renner; Kenneth C Jones; Sugandha Dandekar; Jeanette C Papp; Yang Da; Eric D Green; Vincent Magrini; Matthew T Hickenbotham; Jarret Glasscock; Sean McGrath; Elaine R Mardis; Oliver A Ryder
Journal:  BMC Genomics       Date:  2009-07-14       Impact factor: 3.969
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