Literature DB >> 11847081

Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays.

H B Nielsen1, S Knudsen.   

Abstract

PROBEWIZ designs PCR primers for amplifying probes for cDNA arrays. The probes are designed to have minimal homology to other expressed sequences from a given organism. The primer selection is based on user-defined penalties for homology, primer quality, and proximity to the 3' end.

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Year:  2002        PMID： 11847081     DOI： 10.1093/bioinformatics/18.2.321

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  16 in total

1.  A PCR primer bank for quantitative gene expression analysis.

Authors:  Xiaowei Wang; Brian Seed
Journal:  Nucleic Acids Res       Date:  2003-12-15       Impact factor: 16.971

2.  PROBEmer: A web-based software tool for selecting optimal DNA oligos.

Authors:  Scott J Emrich; Mary Lowe; Arthur L Delcher
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Genome-scale design of PCR primers and long oligomers for DNA microarrays.

Authors:  Stefan A Haas; Marc Hild; Anthony P H Wright; Torsten Hain; Driss Talibi; Martin Vingron
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

4.  Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays.

Authors:  Paul M K Gordon; Christoph W Sensen
Journal:  Nucleic Acids Res       Date:  2004-09-29       Impact factor: 16.971

5.  Temporal transcription program of recombinant Autographa californica multiple nucleopolyhedrosis virus.

Authors:  Shih Sheng Jiang; I-Shou Chang; Lin-Wei Huang; Po-Cheng Chen; Chi-Chung Wen; Shu-Chen Liu; Li-Chu Chien; Chung-Yen Lin; Chao A Hsiung; Jyh-Lyh Juang
Journal:  J Virol       Date:  2006-09       Impact factor: 5.103

6.  Genome-wide selection of unique and valid oligonucleotides.

Authors:  Heikki Hyyrö; Martti Juhola; Mauno Vihinen
Journal:  Nucleic Acids Res       Date:  2005-07-26       Impact factor: 16.971

7.  A multivariate prediction model for microarray cross-hybridization.

Authors:  Yian A Chen; Cheng-Chung Chou; Xinghua Lu; Elizabeth H Slate; Konan Peck; Wenying Xu; Eberhard O Voit; Jonas S Almeida
Journal:  BMC Bioinformatics       Date:  2006-03-01       Impact factor: 3.169

8.  Improvement in the reproducibility and accuracy of DNA microarray quantification by optimizing hybridization conditions.

Authors:  Tao Han; Cathy D Melvin; Leming Shi; William S Branham; Carrie L Moland; P Scott Pine; Karol L Thompson; James C Fuscoe
Journal:  BMC Bioinformatics       Date:  2006-09-06       Impact factor: 3.169

9.  The Sterolgene v0 cDNA microarray: a systemic approach to studies of cholesterol homeostasis and drug metabolism.

Authors:  Tadeja Rezen; Peter Juvan; Klementina Fon Tacer; Drago Kuzman; Adrian Roth; Denis Pompon; Lawrence P Aggerbeck; Urs A Meyer; Damjana Rozman
Journal:  BMC Genomics       Date:  2008-02-11       Impact factor: 3.969

Review 10.  Microarray probes and probe sets.

Authors:  Hongfang Liu; Ionut Bebu; Xin Li
Journal:  Front Biosci (Elite Ed)       Date:  2010-01-01
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