Literature DB >> 11847080

A cluster validity framework for genome expression data.

F Azuaje1.   

Abstract

This paper presents a method for the assessment of expression cluster validity.

Mesh：

Year:  2002        PMID： 11847080     DOI： 10.1093/bioinformatics/18.2.319

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  12 in total

1.  Statistical comparison framework and visualization scheme for ranking-based algorithms in high-throughput genome-wide studies.

Authors:  Waibhav D Tembe; John V Pearson; Nils Homer; James Lowey; Edward Suh; David W Craig
Journal:  J Comput Biol       Date:  2009-04       Impact factor: 1.479

2.  Construction of gene regulatory networks using biclustering and Bayesian networks.

Authors:  Fadhl M Alakwaa; Nahed H Solouma; Yasser M Kadah
Journal:  Theor Biol Med Model       Date:  2011-10-22       Impact factor: 2.432

3.  Gene Expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationships.

Authors:  Haiying Wang; Francisco Azuaje; Olivier Bodenreider; Joaquín Dopazo
Journal:  Proc IEEE Symp Comput Intell Bioinforma Comput Biol       Date:  2004-10-07

4.  Temporal evolution of the Arabidopsis oxidative stress response.

Authors:  Ramamurthy Mahalingam; Nigam Shah; Alexandra Scrymgeour; Nina Fedoroff
Journal:  Plant Mol Biol       Date:  2005-03       Impact factor: 4.076

5.  Clustering algorithms: on learning, validation, performance, and applications to genomics.

Authors:  Lori Dalton; Virginia Ballarin; Marcel Brun
Journal:  Curr Genomics       Date:  2009-09       Impact factor: 2.236

6.  A general co-expression network-based approach to gene expression analysis: comparison and applications.

Authors:  Jianhua Ruan; Angela K Dean; Weixiong Zhang
Journal:  BMC Syst Biol       Date:  2010-02-02

7.  Characterization of pathways involved in colorectal cancer using real-time RT-PCR gene expression data.

Authors:  Samira Shabani; Nasibeh Khayer; Jamshid Motalebzadeh; Tayebeh Majidi Zadeh; Frouzandeh Mahjoubi
Journal:  Gastroenterol Hepatol Bed Bench       Date:  2021

8.  Automated generation of massive image knowledge collections using Microsoft Live Labs Pivot to promote neuroimaging and translational research.

Authors:  Teeradache Viangteeravat; Matthew N Anyanwu; Venkateswara Ra Nagisetty; Emin Kuscu
Journal:  J Clin Bioinforma       Date:  2011-07-15

9.  Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12.

Authors:  Jingjun Sun; Kagan Tuncay; Alaa Abi Haidar; Lisa Ensman; Frank Stanley; Michael Trelinski; Peter Ortoleva
Journal:  Algorithms Mol Biol       Date:  2007-03-30       Impact factor: 1.405

10.  Next station in microarray data analysis: GEPAS.

Authors:  David Montaner; Joaquín Tárraga; Jaime Huerta-Cepas; Jordi Burguet; Juan M Vaquerizas; Lucía Conde; Pablo Minguez; Javier Vera; Sach Mukherjee; Joan Valls; Miguel A G Pujana; Eva Alloza; Javier Herrero; Fátima Al-Shahrour; Joaquín Dopazo
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971
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