Literature DB >> 11839295

Cytosines do it, thymines do it, even pseudouridines do it--base flipping by an enzyme that acts on RNA.

Xiaodong Cheng1, Robert M Blumenthal.   

Abstract

In the December 28, 2001 issue of Cell, Hoang and Ferré-D'Amaré report the structure of a tRNA pseudouridine synthase, showing the target uridine flipped out from the tRNA and confirming that base flipping is not limited to enzymes that act on DNA.

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Year:  2002        PMID： 11839295      PMCID： PMC4049157          DOI： 10.1016/s0969-2126(02)00710-4

Source DB:  PubMed          Journal:  Structure        ISSN： 0969-2126            Impact factor:   5.006


  10 in total

1.  Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis.

Authors:  P B Rupert; A R Ferré-D'Amaré
Journal:  Nature       Date:  2001-04-12       Impact factor: 49.962

2.  Crystal structure of an initiation factor bound to the 30S ribosomal subunit.

Authors:  A P Carter; W M Clemons; D E Brodersen; R J Morgan-Warren; T Hartsch; B T Wimberly; V Ramakrishnan
Journal:  Science       Date:  2001-01-19       Impact factor: 47.728

3.  Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis.

Authors:  A A Andersen; R A Collins
Journal:  Mol Cell       Date:  2000-03       Impact factor: 17.970

4.  Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme.

Authors:  C Hoang; A R Ferré-D'Amaré
Journal:  Cell       Date:  2001-12-28       Impact factor: 41.582

5.  Crystal structures of restrictocin-inhibitor complexes with implications for RNA recognition and base flipping.

Authors:  X Yang; T Gérczei; L T Glover; C C Correll
Journal:  Nat Struct Biol       Date:  2001-11

6.  Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics.

Authors:  A P Carter; W M Clemons; D E Brodersen; R J Morgan-Warren; B T Wimberly; V Ramakrishnan
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

Review 7.  Base flipping.

Authors:  R J Roberts; X Cheng
Journal:  Annu Rev Biochem       Date:  1998       Impact factor: 23.643

8.  The mechanism of pseudouridine synthase I as deduced from its interaction with 5-fluorouracil-tRNA.

Authors:  X Gu; Y Liu; D V Santi
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

9.  HhaI methyltransferase flips its target base out of the DNA helix.

Authors:  S Klimasauskas; S Kumar; R J Roberts; X Cheng
Journal:  Cell       Date:  1994-01-28       Impact factor: 41.582

10.  A second function for pseudouridine synthases: A point mutant of RluD unable to form pseudouridines 1911, 1915, and 1917 in Escherichia coli 23S ribosomal RNA restores normal growth to an RluD-minus strain.

Authors:  N S Gutgsell; M Del Campo; S Raychaudhuri; J Ofengand
Journal:  RNA       Date:  2001-07       Impact factor: 4.942
  10 in total
  5 in total

1.  Substrate binding analysis of the 23S rRNA methyltransferase RrmJ.

Authors:  Jutta Hager; Bart L Staker; Ursula Jakob
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

2.  Structural basis for the methylation of G1405 in 16S rRNA by aminoglycoside resistance methyltransferase Sgm from an antibiotic producer: a diversity of active sites in m7G methyltransferases.

Authors:  Nilofer Husain; Karolina L Tkaczuk; Shenoy Rajesh Tulsidas; Katarzyna H Kaminska; Sonja Cubrilo; Gordana Maravić-Vlahovicek; Janusz M Bujnicki; J Sivaraman
Journal:  Nucleic Acids Res       Date:  2010-03-01       Impact factor: 16.971

3.  Structural insights into the function of aminoglycoside-resistance A1408 16S rRNA methyltransferases from antibiotic-producing and human pathogenic bacteria.

Authors:  Rachel Macmaster; Natalia Zelinskaya; Miloje Savic; C Robert Rankin; Graeme L Conn
Journal:  Nucleic Acids Res       Date:  2010-07-17       Impact factor: 16.971

4.  Highlights of the DNA cutters: a short history of the restriction enzymes.

Authors:  Wil A M Loenen; David T F Dryden; Elisabeth A Raleigh; Geoffrey G Wilson; Noreen E Murray
Journal:  Nucleic Acids Res       Date:  2013-10-18       Impact factor: 16.971

Review 5.  Type I restriction enzymes and their relatives.

Authors:  Wil A M Loenen; David T F Dryden; Elisabeth A Raleigh; Geoffrey G Wilson
Journal:  Nucleic Acids Res       Date:  2013-09-24       Impact factor: 16.971
  5 in total

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