Literature DB >> 11836233

Using biplots to interpret gene expression patterns in plants.

Scott Chapman1, Peer Schenk, Kemal Kazan, John Manners.   

Abstract

Plant biologists in fields of ecology, evolution, genetics and breeding frequently use multivariate methods. This paper illustrates Principal Component Analysis (PCA) and Gabriel's biplot as applied to microarray expression data from plant pathology experiments.

Mesh：

Year:  2002        PMID： 11836233     DOI： 10.1093/bioinformatics/18.1.202

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  20 in total

1.  Systemic gene expression in Arabidopsis during an incompatible interaction with Alternaria brassicicola.

Authors:  Peer M Schenk; Kemal Kazan; John M Manners; Jonathan P Anderson; Robert S Simpson; Iain W Wilson; Shauna C Somerville; Don J Maclean
Journal:  Plant Physiol       Date:  2003-05-01       Impact factor: 8.340

2.  Expression profile analysis of the low-oxygen response in Arabidopsis root cultures.

Authors:  Erik Jan Klok; Iain W Wilson; Dale Wilson; Scott C Chapman; Rob M Ewing; Shauna C Somerville; W James Peacock; Rudy Dolferus; Elizabeth S Dennis
Journal:  Plant Cell       Date:  2002-10       Impact factor: 11.277

3.  Co-expression of soybean Dicer-like genes in response to stress and development.

Authors:  Shaun J Curtin; Michael B Kantar; Han W Yoon; Adam M Whaley; Jessica A Schlueter; Robert M Stupar
Journal:  Funct Integr Genomics       Date:  2012-04-15       Impact factor: 3.410

4.  Early expression of yeast genes affected by chemical stress.

Authors:  A Lucau-Danila; G Lelandais; Z Kozovska; V Tanty; T Delaveau; F Devaux; C Jacq
Journal:  Mol Cell Biol       Date:  2005-03       Impact factor: 4.272

5.  Hydrocortisone-induced anti-inflammatory effects in immature human enterocytes depend on the timing of exposure.

Authors:  Samuli Rautava; W Allan Walker; Lei Lu
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2016-04-07       Impact factor: 4.052

6.  Identification of biomarkers of human pancreatic adenocarcinomas by expression profiling and validation with gene expression analysis in endoscopic ultrasound-guided fine needle aspiration samples.

Authors:  Henrik Laurell; Michele Bouisson; Philippe Berthelemy; Philippe Rochaix; Sebastien Dejean; Philippe Besse; Christiane Susini; Lucien Pradayrol; Nicole Vaysse; Louis Buscail
Journal:  World J Gastroenterol       Date:  2006-06-07       Impact factor: 5.742

7.  Physiological performance and differential expression profiling of genes associated with drought tolerance in contrasting varieties of two Gossypium species.

Authors:  Ruchi Singh; Neha Pandey; Jishnu Naskar; Pramod A Shirke
Journal:  Protoplasma       Date:  2014-08-23       Impact factor: 3.356

8.  Development of an environmental functional gene microarray for soil microbial communities.

Authors:  Ken C McGrath; Rhiannon Mondav; Regina Sintrajaya; Bill Slattery; Susanne Schmidt; Peer M Schenk
Journal:  Appl Environ Microbiol       Date:  2010-09-17       Impact factor: 4.792

9.  A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58.

Authors:  Shigetoshi Yokoyama; Yoshiaki Ito; Hiroe Ueno-Kudoh; Hirohito Shimizu; Kenta Uchibe; Sonia Albini; Kazuhiko Mitsuoka; Shigeru Miyaki; Minako Kiso; Akane Nagai; Tomohiro Hikata; Tadahiro Osada; Noritsugu Fukuda; Satoshi Yamashita; Daisuke Harada; Valeria Mezzano; Masataka Kasai; Pier Lorenzo Puri; Yoshihide Hayashizaki; Haruo Okado; Megumi Hashimoto; Hiroshi Asahara
Journal:  Dev Cell       Date:  2009-12       Impact factor: 12.270

10.  Transcriptome for photobiological hydrogen production induced by sulfur deprivation in the green alga Chlamydomonas reinhardtii.

Authors:  Anh Vu Nguyen; Skye R Thomas-Hall; Alizée Malnoë; Matthew Timmins; Jan H Mussgnug; Jens Rupprecht; Olaf Kruse; Ben Hankamer; Peer M Schenk
Journal:  Eukaryot Cell       Date:  2008-08-15
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.