Literature DB >> 11823255

Quantitation of DNA sequences in environmental PCR products by a multiplexed, bead-based method.

Alexander Spiro1, Mary Lowe.   

Abstract

A first application of a multiplexed, bead-based method is described for determining the abundances of target sequences in an environmental PCR product. Target sequences as little as 0.3% of the total amount of DNA can be quantified. Tests were conducted on 16S ribosomal DNA sequences from microorganisms collected from contaminated groundwater.

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Year:  2002        PMID: 11823255      PMCID: PMC126726          DOI: 10.1128/AEM.68.2.1010-1013.2002

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  4 in total

1.  DNA hybridization on microparticles: determining capture-probe density and equilibrium dissociation constants.

Authors:  P Wilkins Stevens; M R Henry; D M Kelso
Journal:  Nucleic Acids Res       Date:  1999-04-01       Impact factor: 16.971

2.  A bead-based method for multiplexed identification and quantitation of DNA sequences using flow cytometry.

Authors:  A Spiro; M Lowe; D Brown
Journal:  Appl Environ Microbiol       Date:  2000-10       Impact factor: 4.792

3.  Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment.

Authors:  S M Barns; R E Fundyga; M W Jeffries; N R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-01       Impact factor: 11.205

4.  Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation.

Authors:  M A Dojka; P Hugenholtz; S K Haack; N R Pace
Journal:  Appl Environ Microbiol       Date:  1998-10       Impact factor: 4.792

  4 in total
  11 in total

Review 1.  Methodologies for the characterization of microbes in industrial environments: a review.

Authors:  Johanna Maukonen; Jaana Mättö; Gun Wirtanen; Laura Raaska; Tiina Mattila-Sandholm; Maria Saarela
Journal:  J Ind Microbiol Biotechnol       Date:  2003-05-23       Impact factor: 3.346

2.  PROBEmer: A web-based software tool for selecting optimal DNA oligos.

Authors:  Scott J Emrich; Mary Lowe; Arthur L Delcher
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Automated purification and suspension array detection of 16S rRNA from soil and sediment extracts by using tunable surface microparticles.

Authors:  Darrell P Chandler; Ann E Jarrell
Journal:  Appl Environ Microbiol       Date:  2004-05       Impact factor: 4.792

4.  Response of subgingival bacteria to smoking cessation.

Authors:  Suzanne L Delima; Robert K McBride; Philip M Preshaw; Peter A Heasman; Purnima S Kumar
Journal:  J Clin Microbiol       Date:  2010-04-21       Impact factor: 5.948

Review 5.  Multiplexed and microparticle-based analyses: quantitative tools for the large-scale analysis of biological systems.

Authors:  John P Nolan; Francis Mandy
Journal:  Cytometry A       Date:  2006-05       Impact factor: 4.355

6.  Performance of fluorescent labels in sedimentation bead arrays--a comparison study.

Authors:  Torsten Mayr; Christoph Moser; Ingo Klimant
Journal:  J Fluoresc       Date:  2008-09-20       Impact factor: 2.217

7.  Luminex detection of fecal indicators in river samples, marine recreational water, and beach sand.

Authors:  Iliana B Baums; Kelly D Goodwin; Traci Kiesling; David Wanless; Mara R Diaz; Jack W Fell
Journal:  Mar Pollut Bull       Date:  2007-03-09       Impact factor: 5.553

8.  Multiplex detection of bacteria associated with normal microbiota and with bacterial vaginosis in vaginal swabs by use of oligonucleotide-coupled fluorescent microspheres.

Authors:  Tim J Dumonceaux; John Schellenberg; Vanessa Goleski; Janet E Hill; Walter Jaoko; Joshua Kimani; Deborah Money; T Blake Ball; Francis A Plummer; Alberto Severini
Journal:  J Clin Microbiol       Date:  2009-09-30       Impact factor: 5.948

9.  Design of a microsphere-based high-throughput gene expression assay to determine estrogenic potential.

Authors:  Jorge M Naciff; Brian D Richardson; Kerry G Oliver; M Lynn Jump; Suzanne M Torontali; Kenton D Juhlin; Gregory J Carr; Jennifer R Paine; Jay P Tiesman; George P Daston
Journal:  Environ Health Perspect       Date:  2005-09       Impact factor: 9.031

10.  Locked nucleic acid pentamers as universal PCR primers for genomic DNA amplification.

Authors:  Zhen Sun; Zhi Chen; Xiaoli Hou; Shuping Li; Haihong Zhu; Ji Qian; Daru Lu; Wei Liu
Journal:  PLoS One       Date:  2008-11-11       Impact factor: 3.240

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