Literature DB >> 11808748

Exploiting big biology: integrating large-scale biological data for function inference.

E Marcotte1, S Date.   

Abstract

The amount of data produced by molecular biologists is growing at an exponential rate. Some of the fastest growing sets of data are measurements of gene expression, comparable in quantity only to gene sequences and the vast biological literature. Both gene expression data and sequence data offer hints as to the functions of thousands of newly discovered genes, but neither give complete answers. Therefore, much effort is being focused on integrating these large data sets and combining them with all available functional data to draw inferences about the functions of uncharacterised genes. This review discusses the most pertinent functional data for genome-wide functional inference and describes several methods by which these disparate data types are being integrated.

Mesh:

Year:  2001        PMID: 11808748     DOI: 10.1093/bib/2.4.363

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  11 in total

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Authors:  Marc Vidal; Michael E Cusick; Albert-László Barabási
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

2.  QiSampler: evaluation of scoring schemes for high-throughput datasets using a repetitive sampling strategy on gold standards.

Authors:  Jean F Fontaine; Bernhard Suter; Miguel A Andrade-Navarro
Journal:  BMC Res Notes       Date:  2011-03-09

3.  Learning to rank figures within a biomedical article.

Authors:  Feifan Liu; Hong Yu
Journal:  PLoS One       Date:  2014-03-13       Impact factor: 3.240

4.  Génie: literature-based gene prioritization at multi genomic scale.

Authors:  Jean-Fred Fontaine; Florian Priller; Adriano Barbosa-Silva; Miguel A Andrade-Navarro
Journal:  Nucleic Acids Res       Date:  2011-05-23       Impact factor: 16.971

5.  A multipurpose vector system for the screening of libraries in bacteria, insect and mammalian cells and expression in vivo.

Authors:  Olli H Laitinen; Kari J Airenne; Vesa P Hytönen; Erik Peltomaa; Anssi J Mähönen; Thomas Wirth; Miia M Lind; Kari A Mäkelä; Pyry I Toivanen; Diana Schenkwein; Tommi Heikura; Henri R Nordlund; Markku S Kulomaa; Seppo Ylä-Herttuala
Journal:  Nucleic Acids Res       Date:  2005-02-24       Impact factor: 16.971

Review 6.  The role of protein interaction networks in systems biomedicine.

Authors:  Tuba Sevimoglu; Kazim Yalcin Arga
Journal:  Comput Struct Biotechnol J       Date:  2014-09-03       Impact factor: 7.271

7.  ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage.

Authors:  Francisco J Romero-Campero; Ignacio Perez-Hurtado; Eva Lucas-Reina; Jose M Romero; Federico Valverde
Journal:  BMC Genomics       Date:  2016-03-12       Impact factor: 3.969

8.  Functional determinants of protein assembly into homomeric complexes.

Authors:  L Therese Bergendahl; Joseph A Marsh
Journal:  Sci Rep       Date:  2017-07-10       Impact factor: 4.379

9.  Gene Expression Analysis Platform (GEAP): A highly customizable, fast, versatile and ready-to-use microarray analysis platform.

Authors:  Itamar José Guimarães Nunes; Mariana Recamonde-Mendoza; Bruno César Feltes
Journal:  Genet Mol Biol       Date:  2021-12-17       Impact factor: 1.771

10.  A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).

Authors:  Olga G Troyanskaya; Kara Dolinski; Art B Owen; Russ B Altman; David Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-25       Impact factor: 12.779

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