Literature DB >> 11804721

X-ray and neutron scattering analyses of hydration shells: a molecular interpretation based on sequence predictions and modelling fits.

S J Perkins1.   

Abstract

Solution scattering is a low resolution diffraction method that provides important structural data on proteins. The ability to model scattering curves by recourse to known crystal structures for proteins under study significantly improves the resolution (and the utility) of the method because of the strict constraints that the crystal structures impose. For these structure determinations, a molecular description of the effect of hydration shells is needed. In calibration studies used for X-ray scattering curve modelling, it has been reproducibly found that a hydration shell is required. In molecular terms, this results from the higher electron density of the hydration shell compared to that of bulk water, which then becomes similar to that of the protein. This is well represented by a level of 0.3 g H(2)O/g glycoprotein and a water molecule volume of 0.0245 nm(3). Procedures for the addition of a hydration shell to a sphere model of a protein are described. For neutron scattering fits, it is not necessary to incorporate a hydration shell, as to a good approximation this is not detectable. In molecular terms, this apparent absence of the neutron hydration shell results from the effect of proton exchange on the scattering densities of bulk water and bound water which causes these to be similar but different from that of the protein.

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Year:  2001        PMID: 11804721     DOI: 10.1016/s0301-4622(01)00216-2

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  34 in total

1.  Modeling the hydration of proteins: prediction of structural and hydrodynamic parameters from X-ray diffraction and scattering data.

Authors:  Helmut Durchschlag; Peter Zipper
Journal:  Eur Biophys J       Date:  2003-04-25       Impact factor: 1.733

Review 2.  Modern analytical ultracentrifugation in protein science: a tutorial review.

Authors:  Jacob Lebowitz; Marc S Lewis; Peter Schuck
Journal:  Protein Sci       Date:  2002-09       Impact factor: 6.725

3.  Protein disorder: conformational distribution of the flexible linker in a chimeric double cellulase.

Authors:  Ingemar von Ossowski; Julian T Eaton; Mirjam Czjzek; Stephen J Perkins; Torben P Frandsen; Martin Schülein; Pierre Panine; Bernard Henrissat; Veronique Receveur-Bréchot
Journal:  Biophys J       Date:  2005-01-14       Impact factor: 4.033

4.  Probing the collective vibrational dynamics of a protein in liquid water by terahertz absorption spectroscopy.

Authors:  Jing Xu; Kevin W Plaxco; S James Allen
Journal:  Protein Sci       Date:  2006-05       Impact factor: 6.725

5.  Analytical ultracentrifugation: sedimentation velocity and sedimentation equilibrium.

Authors:  James L Cole; Jeffrey W Lary; Thomas P Moody; Thomas M Laue
Journal:  Methods Cell Biol       Date:  2008       Impact factor: 1.441

6.  The nonplanar secretory IgA2 and near planar secretory IgA1 solution structures rationalize their different mucosal immune responses.

Authors:  Alexandra Bonner; Adel Almogren; Patricia B Furtado; Michael A Kerr; Stephen J Perkins
Journal:  J Biol Chem       Date:  2008-12-23       Impact factor: 5.157

7.  Accurate SAXS profile computation and its assessment by contrast variation experiments.

Authors:  Dina Schneidman-Duhovny; Michal Hammel; John A Tainer; Andrej Sali
Journal:  Biophys J       Date:  2013-08-20       Impact factor: 4.033

8.  Constrained solution scattering modelling of human antibodies and complement proteins reveals novel biological insights.

Authors:  Stephen J Perkins; Azubuike I Okemefuna; Ruodan Nan; Keying Li; Alexandra Bonner
Journal:  J R Soc Interface       Date:  2009-07-15       Impact factor: 4.118

9.  Analysis of PKR structure by small-angle scattering.

Authors:  Jennifer VanOudenhove; Eric Anderson; Susan Krueger; James L Cole
Journal:  J Mol Biol       Date:  2009-02-14       Impact factor: 5.469

10.  C-reactive protein exists in an NaCl concentration-dependent pentamer-decamer equilibrium in physiological buffer.

Authors:  Azubuike I Okemefuna; Lasse Stach; Sudeep Rana; Akim J Ziai Buetas; Jayesh Gor; Stephen J Perkins
Journal:  J Biol Chem       Date:  2009-11-10       Impact factor: 5.157

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