Literature DB >> 11804720

The diluted aqueous solvation of carbohydrates as inferred from molecular dynamics simulations and NMR spectroscopy.

S B Engelsen1, C Monteiro, C Hervé de Penhoat, S Pérez.   

Abstract

The purpose of this paper is to review our understanding of the dilute hydration (aqueous solvation) behaviour of disaccharide compounds. To this end we discuss and scrutinize the results that have been obtained for the three model disaccharides: maltose, sucrose and trehalose from experimental NMR studies and from theoretical molecular dynamics studies in explicit aqueous solutions. The focus is on the description of molecular hydration features that will influence macroscopic entities such as diffusion and relaxation: residence times of hydration waters, hydration numbers and hydration densities. The principles of molecular dynamics simulation are briefly outlined while a detailed presentation is given of the key features that characterise hydration: the solvation of the glycosidic linkage, the radial hydration of the solute, the water density anisotropy around the solute, the residential behaviour of water molecules in the periphery of the solute, and rotational and translational diffusion coefficients. With respect to the use of NMR in characterising the structure and dynamics of the hydration, the hydrodynamic theory of rotational and translational diffusion of biomolecules as well as the use of pulse field gradient spin echo experiments are briefly presented. The NMR-defined rotational diffusion coefficients (D(r)) and the experimentally determined translational diffusion (D(t)) coefficients are reported for 4% (w/w) solutions of sucrose, trehalose and maltose. These results are compared with theoretical data obtained from molecular dynamics simulations of sucrose, trehalose and maltose under identical conditions (concentration, temperature, etc.). With our present level of knowledge we can propose that although carbohydrates share a number of hydration characteristics, evidence is accumulating in support of the notion that it is not the amount or overall hydration but rather the detailed individual carbohydrate-water interaction that is likely to determine carbohydrate structure and functionality.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11804720     DOI: 10.1016/s0301-4622(01)00215-0

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  10 in total

1.  Sucrose in aqueous solution revisited, Part 2: adaptively biased molecular dynamics simulations and computational analysis of NMR relaxation.

Authors:  Junchao Xia; David A Case
Journal:  Biopolymers       Date:  2011-11-05       Impact factor: 2.505

2.  Sucrose in aqueous solution revisited, Part 1: molecular dynamics simulations and direct and indirect dipolar coupling analysis.

Authors:  Junchao Xia; David A Case
Journal:  Biopolymers       Date:  2011-12-20       Impact factor: 2.505

3.  Influence of solvent and intramolecular hydrogen bonding on the conformational properties of o-linked glycopeptides.

Authors:  Sairam S Mallajosyula; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2011-08-31       Impact factor: 2.991

4.  Comparing simulated and experimental translation and rotation constants: range of validity for viscosity scaling.

Authors:  Richard M Venable; Elizabeth Hatcher; Olgun Guvench; Alexander D Mackerell; Richard W Pastor
Journal:  J Phys Chem B       Date:  2010-10-07       Impact factor: 2.991

5.  Encapsulation of Blackberry Phenolics and Volatiles Using Apple Fibers and Disaccharides.

Authors:  Mirela Kopjar; Ivana Buljeta; Mario Nosić; Ivana Ivić; Josip Šimunović; Anita Pichler
Journal:  Polymers (Basel)       Date:  2022-05-27       Impact factor: 4.967

Review 6.  First principles insight into the alpha-glucan structures of starch: their synthesis, conformation, and hydration.

Authors:  Iben Damager; Søren Balling Engelsen; Andreas Blennow; Birger Lindberg Møller; Mohammed Saddik Motawia
Journal:  Chem Rev       Date:  2010-04-14       Impact factor: 60.622

7.  A hydration study of (1-->4) and (1-->6) linked alpha-glucans by comparative 10 ns molecular dynamics simulations and 500-MHz NMR.

Authors:  Francisco Corzana; Mohammed S Motawia; Catherine Hervé Du Penhoat; Serge Perez; Sarah M Tschampel; Robert J Woods; Søren B Engelsen
Journal:  J Comput Chem       Date:  2004-03       Impact factor: 3.376

8.  Disaccharides: Influence on Volatiles and Phenolics of Sour Cherry Juice.

Authors:  Emil Zlatić; Anita Pichler; Mirela Kopjar
Journal:  Molecules       Date:  2017-11-09       Impact factor: 4.411

9.  Conformational properties of α- or β-(1→6)-linked oligosaccharides: Hamiltonian replica exchange MD simulations and NMR experiments.

Authors:  Dhilon S Patel; Robert Pendrill; Sairam S Mallajosyula; Göran Widmalm; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2014-03-05       Impact factor: 2.991

10.  Structural Comparison between Sucrose and Trehalose in Aqueous Solution.

Authors:  Christoffer Olsson; Jan Swenson
Journal:  J Phys Chem B       Date:  2020-04-03       Impact factor: 2.991

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.