Literature DB >> 11801041

Dynamical scaling of the DNA unzipping transition.

D Marenduzzo1, Somendra M Bhattacharjee, A Maritan, E Orlandini, F Seno.   

Abstract

We report studies of the dynamics of a set of exactly solvable lattice models for the force-induced DNA unzipping transition. Besides yielding the whole equilibrium phase diagram, which reveals a reentrance, these models enable us to characterize the dynamics of the process starting from a nonequilibrium initial condition. The thermal melting of DNA displays a model dependent time evolution. On the contrary, the dynamical mechanism for the unzipping by force is very robust and the scaling behavior is independent of the details of the description and, hence, superuniversal.

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Year:  2001        PMID: 11801041     DOI: 10.1103/PhysRevLett.88.028102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  7 in total

1.  DNA unzipped under a constant force exhibits multiple metastable intermediates.

Authors:  Claudia Danilowicz; Vincent W Coljee; Cedric Bouzigues; David K Lubensky; David R Nelson; Mara Prentiss
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-06       Impact factor: 11.205

2.  Analysis of a DNA simulation model through hairpin melting experiments.

Authors:  Margaret C Linak; Kevin D Dorfman
Journal:  J Chem Phys       Date:  2010-09-28       Impact factor: 3.488

3.  Pause point spectra in DNA constant-force unzipping.

Authors:  J D Weeks; J B Lucks; Y Kafri; C Danilowicz; D R Nelson; M Prentiss
Journal:  Biophys J       Date:  2005-02-04       Impact factor: 4.033

4.  Statistical theory of force-induced unzipping of DNA.

Authors:  N Singh; Y Singh
Journal:  Eur Phys J E Soft Matter       Date:  2005-03-18       Impact factor: 1.890

5.  Gaussian fluctuations in tethered DNA chains.

Authors:  Shuang-Liang Zhao; Jiamin Wu; Di Gao; Jianzhong Wu
Journal:  J Chem Phys       Date:  2011-02-14       Impact factor: 3.488

6.  Free-energy landscape and characteristic forces for the initiation of DNA unzipping.

Authors:  Ahmet Mentes; Ana Maria Florescu; Elizabeth Brunk; Jeff Wereszczynski; Marc Joyeux; Ioan Andricioaei
Journal:  Biophys J       Date:  2015-04-07       Impact factor: 4.033

7.  Determination of the Thermodynamic Parameters of DNA Double Helix Unwinding with the Help of Mechanical Methods.

Authors:  Nina N Kurus; Fedor N Dultsev
Journal:  ACS Omega       Date:  2018-03-08
  7 in total

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