Literature DB >> 11800684

Model of a fluid at small and large length scales and the hydrophobic effect.

Pieter Rein ten Wolde1, Sean X Sun, David Chandler.   

Abstract

We present a statistical field theory to describe large length scale effects induced by solutes in a cold and otherwise placid liquid. The theory divides space into a cubic grid of cells. The side length of each cell is of the order of the bulk correlation length of the bulk liquid. Large length scale states of the cells are specified with an Ising variable. Finer length scale effects are described with a Gaussian field, with mean and variance affected by both the large length scale field and by the constraints imposed by solutes. In the absence of solutes and corresponding constraints, integration over the Gaussian field yields an effective lattice-gas Hamiltonian for the large length scale field. In the presence of solutes, the integration adds additional terms to this Hamiltonian. We identify these terms analytically. They can provoke large length scale effects, such as the formation of interfaces and depletion layers. We apply our theory to compute the reversible work to form a bubble in liquid water, as a function of the bubble radius. Comparison with molecular simulation results for the same function indicates that the theory is reasonably accurate. Importantly, simulating the large length scale field involves binary arithmetic only. It thus provides a computationally convenient scheme to incorporate explicit solvent dynamics and structure in simulation studies of large molecular assemblies.

Entities:  

Year:  2001        PMID: 11800684     DOI: 10.1103/PhysRevE.65.011201

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  6 in total

1.  Drying-induced hydrophobic polymer collapse.

Authors:  Pieter Rein ten Wolde; David Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

2.  Free energy landscapes for amyloidogenic tetrapeptides dimerization.

Authors:  A Baumketner; J-E Shea
Journal:  Biophys J       Date:  2005-09       Impact factor: 4.033

3.  An improved coarse-grained model of solvation and the hydrophobic effect.

Authors:  Patrick Varilly; Amish J Patel; David Chandler
Journal:  J Chem Phys       Date:  2011-02-21       Impact factor: 3.488

4.  Structure of the 21-30 fragment of amyloid beta-protein.

Authors:  Andrij Baumketner; Summer L Bernstein; Thomas Wyttenbach; Noel D Lazo; David B Teplow; Michael T Bowers; Joan-Emma Shea
Journal:  Protein Sci       Date:  2006-06       Impact factor: 6.725

5.  The hydrophobic effect, and fluctuations: The long and the short of it.

Authors:  Erte Xi; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-14       Impact factor: 11.205

6.  Necessity of capillary modes in a minimal model of nanoscale hydrophobic solvation.

Authors:  Suriyanarayanan Vaikuntanathan; Grant Rotskoff; Alexander Hudson; Phillip L Geissler
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-08       Impact factor: 11.205

  6 in total

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