Literature DB >> 11785752

Dipolar couplings as a probe of molecular dynamics and structure in solution.

J R Tolman1.   

Abstract

The introduction of residual dipolar coupling methodology has increased the scope of structural biological problems that can be addressed by NMR spectroscopy. Conformational changes, the relative orientation of domains, and intermolecular complexes can now be characterized accurately and rapidly using NMR. The development of residual dipolar coupling methodology for the rapid recognition of homologous protein folds and for studies of submillisecond timescale dynamics has also seen considerable progress.

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Year:  2001        PMID: 11785752     DOI: 10.1016/s0959-440x(00)00245-1

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  25 in total

1.  Protein structure prediction using sparse dipolar coupling data.

Authors:  Youxing Qu; Jun-tao Guo; Victor Olman; Ying Xu
Journal:  Nucleic Acids Res       Date:  2004-01-26       Impact factor: 16.971

2.  Evaluation of the influence of anisotropic indirect nuclear spin-spin coupling tensors on effective residual dipolar couplings for model peptides.

Authors:  David L Bryce; Roderick E Wasylishen
Journal:  J Biomol NMR       Date:  2003-01       Impact factor: 2.835

3.  Effects of denaturants and substitutions of hydrophobic residues on backbone dynamics of denatured staphylococcal nuclease.

Authors:  Satoshi Ohnishi; David Shortle
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

4.  Measurement of eight scalar and dipolar couplings for methine-methylene pairs in proteins and nucleic acids.

Authors:  Emeric Miclet; Jérôme Boisbouvier; Ad Bax
Journal:  J Biomol NMR       Date:  2005-03       Impact factor: 2.835

5.  Determination of protein backbone structures from residual dipolar couplings.

Authors:  J H Prestegard; K L Mayer; H Valafar; G C Benison
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

6.  Prediction of molecular alignment of nucleic acids in aligned media.

Authors:  Bin Wu; Michael Petersen; Frederic Girard; Marco Tessari; Sybren S Wijmenga
Journal:  J Biomol NMR       Date:  2006-05-23       Impact factor: 2.835

7.  A thorough dynamic interpretation of residual dipolar couplings in ubiquitin.

Authors:  Nils A Lakomek; Teresa Carlomagno; Stefan Becker; Christian Griesinger; Jens Meiler
Journal:  J Biomol NMR       Date:  2006-02       Impact factor: 2.835

8.  REDCRAFT: a tool for simultaneous characterization of protein backbone structure and motion from RDC data.

Authors:  Michael Bryson; Fang Tian; James H Prestegard; Homayoun Valafar
Journal:  J Magn Reson       Date:  2008-01-16       Impact factor: 2.229

Review 9.  NMR-based investigations into target DNA search processes of proteins.

Authors:  Junji Iwahara; Levani Zandarashvili; Catherine A Kemme; Alexandre Esadze
Journal:  Methods       Date:  2018-05-10       Impact factor: 3.608

10.  Dynafold: a dynamic programming approach to protein backbone structure determination from minimal sets of Residual Dipolar Couplings.

Authors:  Rishi Mukhopadhyay; Stephanie Irausquin; Christopher Schmidt; Homayoun Valafar
Journal:  J Bioinform Comput Biol       Date:  2014-01-07       Impact factor: 1.122

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