Literature DB >> 11773970

CAN--a pan-carnivore SINE family.

Nikita S Vassetzky1, Dmitri A Kramerov.   

Abstract

Short retroposons or short interspersed elements (SINEs) constituting 5-10% genome have been isolated from various organisms. CAN SINEs initially found in American mink were named after dogs (Canis), and the range of their distribution in the genomes of carnivores and mammals in general remained topical. Here we demonstrate CAN sequences in representatives of all carnivore families, but not beyond carnivores, on the basis of sequence bank search and genomic PCR. Analysis of their distribution supports division of carnivores into caniform (dogs, mustelids, raccoons, bears, and pinnipeds) and feliform (cats, civets, and hyenas) lineages. CAN structure is considered in the context of their function and evolution.

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Year:  2002        PMID: 11773970     DOI: 10.1007/s00335-001-2111-1

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  17 in total

1.  Evolutionary implications of multiple SINE insertions in an intronic region from diverse mammals.

Authors:  Li Yu; Ya-Ping Zhang
Journal:  Mamm Genome       Date:  2005-10-14       Impact factor: 2.957

2.  Inverse PCR-based method for isolating novel SINEs from genome.

Authors:  Yawei Han; Liping Chen; Lihong Guan; Shunping He
Journal:  Mol Biotechnol       Date:  2014-04       Impact factor: 2.695

Review 3.  Origin and evolution of SINEs in eukaryotic genomes.

Authors:  D A Kramerov; N S Vassetzky
Journal:  Heredity (Edinb)       Date:  2011-06-15       Impact factor: 3.821

4.  Short interspersed elements (SINEs) are a major source of canine genomic diversity.

Authors:  Wei Wang; Ewen F Kirkness
Journal:  Genome Res       Date:  2005-12       Impact factor: 9.043

Review 5.  Carnivore-specific SINEs (Can-SINEs): distribution, evolution, and genomic impact.

Authors:  Kathryn B Walters-Conte; Diana L E Johnson; Marc W Allard; Jill Pecon-Slattery
Journal:  J Hered       Date:  2011 Sep-Oct       Impact factor: 2.645

6.  Feline T-Cell Receptor gamma V- and J-Region Sequences Retrieved from the Trace Archive and from Transcriptome Analysis of Cats.

Authors:  Alexander Thomas Andreas Weiss; Werner Hecht; Manfred Reinacher
Journal:  Vet Med Int       Date:  2010-06-16

7.  Initial sequence and comparative analysis of the cat genome.

Authors:  Joan U Pontius; James C Mullikin; Douglas R Smith; Kerstin Lindblad-Toh; Sante Gnerre; Michele Clamp; Jean Chang; Robert Stephens; Beena Neelam; Natalia Volfovsky; Alejandro A Schäffer; Richa Agarwala; Kristina Narfström; William J Murphy; Urs Giger; Alfred L Roca; Agostinho Antunes; Marilyn Menotti-Raymond; Naoya Yuhki; Jill Pecon-Slattery; Warren E Johnson; Guillaume Bourque; Glenn Tesler; Stephen J O'Brien
Journal:  Genome Res       Date:  2007-11       Impact factor: 9.043

Review 8.  Canine behavioral genetics: pointing out the phenotypes and herding up the genes.

Authors:  Tyrone C Spady; Elaine A Ostrander
Journal:  Am J Hum Genet       Date:  2008-01       Impact factor: 11.025

9.  Class II multiformity generated by variable MHC- DRB region configurations in the California sea lion ( Zalophus californianus).

Authors:  Lizabeth Bowen; Brian M Aldridge; Frances Gulland; William Van Bonn; Robert DeLong; Sharon Melin; Linda J Lowenstine; Jeffrey L Stott; Michael L Johnson
Journal:  Immunogenetics       Date:  2004-03-02       Impact factor: 2.846

10.  SINEBase: a database and tool for SINE analysis.

Authors:  Nikita S Vassetzky; Dmitri A Kramerov
Journal:  Nucleic Acids Res       Date:  2012-11-30       Impact factor: 16.971

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