Literature DB >> 11763971

A web-based Tree View (TV) program for the visualization of phylogenetic trees.

Yufeng Zhai1, Jason Tchieu, Milton H Saier.   

Abstract

We designed a web-based program, Tree View (TV), which uses a dynamic data structure algorithm to draw the phylogenetic tree for a family of homologous proteins. This program has a user-friendly interface and can be easily implemented into other programs for convenient protein sequence analysis. It is available at our web site: http://www.biology.ucsd.edu-yzhai/biotools.html.

Mesh：

Substances：

Year:  2002        PMID： 11763971

Source DB:  PubMed          Journal:  J Mol Microbiol Biotechnol        ISSN： 1464-1801


  32 in total

1.  Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family.

Authors:  Abe L F Silverio; Milton H Saier
Journal:  J Membr Biol       Date:  2011-04-26       Impact factor: 1.843

2.  The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes.

Authors:  Yufeng Zhai; Milton H Saier
Journal:  Protein Sci       Date:  2002-09       Impact factor: 6.725

Review 3.  Phylogenetic characterization of transport protein superfamilies: superiority of SuperfamilyTree programs over those based on multiple alignments.

Authors:  Jonathan S Chen; Vamsee Reddy; Joshua H Chen; Maksim A Shlykov; Wei Hao Zheng; Jaehoon Cho; Ming Ren Yen; Milton H Saier
Journal:  J Mol Microbiol Biotechnol       Date:  2012-01-31

Review 4.  Comparative genomic analyses of the bacterial phosphotransferase system.

Authors:  Ravi D Barabote; Milton H Saier
Journal:  Microbiol Mol Biol Rev       Date:  2005-12       Impact factor: 11.056

Review 5.  Protein-translocating trimeric autotransporters of gram-negative bacteria.

Authors:  David S H Kim; Yi Chao; Milton H Saier
Journal:  J Bacteriol       Date:  2006-08       Impact factor: 3.490

Review 6.  Protein secretion and membrane insertion systems in gram-negative bacteria.

Authors:  Milton H Saier
Journal:  J Membr Biol       Date:  2007-06-02       Impact factor: 1.843

Review 7.  Gap junctional proteins of animals: the innexin/pannexin superfamily.

Authors:  Ming Ren Yen; Milton H Saier
Journal:  Prog Biophys Mol Biol       Date:  2007-03-15       Impact factor: 3.667

Review 8.  Bioinformatic analyses of transmembrane transport: novel software for deducing protein phylogeny, topology, and evolution.

Authors:  Ming Ren Yen; Jeehye Choi; Milton H Saier
Journal:  J Mol Microbiol Biotechnol       Date:  2009-09-18

9.  Animal Ca2+ release-activated Ca2+ (CRAC) channels appear to be homologous to and derived from the ubiquitous cation diffusion facilitators.

Authors:  Madeleine G Matias; Kenny M Gomolplitinant; Dorjee G Tamang; Milton H Saier
Journal:  BMC Res Notes       Date:  2010-06-03

10.  The Transporter Classification Database: recent advances.

Authors:  Milton H Saier; Ming Ren Yen; Keith Noto; Dorjee G Tamang; Charles Elkan
Journal:  Nucleic Acids Res       Date:  2008-11-20       Impact factor: 16.971
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