Literature DB >> 11752782

Sine-enhanced Shake-and-Bake: the theoretical basis and applications to Se-atom substructures.

Hongliang Xu1, Herbert A Hauptman, Charles M Weeks.   

Abstract

Shake-and-Bake is a dual-space direct-methods procedure for crystal structure determination capable of providing ab initio solutions for structures containing as many as 1200 independent non-H atoms, as well as for heavy-atom substructures containing as many as 160 Se atoms in the asymmetric unit. In traditional Shake-and-Bake, phase refinement in reciprocal space utilizes the technique of parameter shift to reduce the value of a minimal function that considers only the mean-square differences between the current values of the cosine structure invariants and their expected values. A new type of minimal function, termed the sine-enhanced minimal function, considers both cosine and sine values of the structure invariants. Exhaustive tests on six Se-atom substructures, ranging in size from 12 to 160 Se atoms in the asymmetric unit, have shown that a two- to eightfold increase in the percentage of trials that converge to solution is attainable with the technique of sine-enhanced parameter shift. The corresponding sine-enhanced Shake-and-Bake, with suitable default parameter values, is being incorporated into a new distributed version of the SnB computer program.

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Year:  2001        PMID: 11752782     DOI: 10.1107/s0907444901017668

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  2 in total

1.  Crystallization and preliminary analysis of active nitroalkane oxidase in three crystal forms.

Authors:  Akanksha Nagpal; Michael P Valley; Paul F Fitzpatrick; Allen M Orville
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-07-21

2.  Crystal structure of pyrogallol-phloroglucinol transhydroxylase, an Mo enzyme capable of intermolecular hydroxyl transfer between phenols.

Authors:  Albrecht Messerschmidt; Holger Niessen; Dietmar Abt; Oliver Einsle; Bernhard Schink; Peter M H Kroneck
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-29       Impact factor: 11.205

  2 in total

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