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Literature DB >> 11752348

GeneNet: a database on structure and functional organisation of gene networks.

E A Ananko¹, N L Podkolodny, I L Stepanenko, E V Ignatieva, O A Podkolodnaya, N A Kolchanov.

Abstract

The GeneNet database is designed for accumulation of information on gene networks. Original technology applied in GeneNet enables description of not only a gene network structure and functional relationships between components, but also metabolic and signal transduction pathways. Specialised software, GeneNet Viewer, automatically displays the graphical diagram of gene networks described in the database. Current release 3.0 of GeneNet database contains descriptions of 25 gene networks, 945 proteins, 567 genes, 151 other substances and 1364 relationships between components of gene networks. Information distributed between 14 interlinked tables was obtained by annotating 968 scientific publications. The SRS-version of GeneNet database is freely available (http://wwwmgs.bionet.nsc.ru/mgs/systems/genenet/).

Mesh：

Substances：
Proteins
RNA

Year: 2002 PMID： 11752348 PMCID： PMC99151 DOI： 10.1093/nar/30.1.398

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

5 in total

1. Transcription regulatory regions database (TRRD): its status in 2000.

Authors: N A Kolchanov; O A Podkolodnaya; E A Ananko; E V Ignatieva; I L Stepanenko; O V Kel-Margoulis; A E Kel; T I Merkulova; T N Goryachkovskaya; T V Busygina; F A Kolpakov; N L Podkolodny; A N Naumochkin; I M Korostishevskaya; A G Romashchenko; G C Overton
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

2. The TRANSFAC system on gene expression regulation.

Authors: E Wingender; X Chen; E Fricke; R Geffers; R Hehl; I Liebich; M Krull; V Matys; H Michael; R Ohnhäuser; M Prüss; F Schacherer; S Thiele; S Urbach
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

3. The EMBL nucleotide sequence database.

Authors: G Stoesser; W Baker; A van den Broek; E Camon; M Garcia-Pastor; C Kanz; T Kulikova; V Lombard; R Lopez; H Parkinson; N Redaschi; P Sterk; P Stoehr; M A Tuli
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

4. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors: A Bairoch; R Apweiler
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

5. GeneNet: a gene network database and its automated visualization.

Authors: F A Kolpakov; E A Ananko; G B Kolesov; N A Kolchanov
Journal: Bioinformatics Date: 1998 Impact factor: 6.937

5 in total

6 in total

GeneNet: a database on structure and functional organisation of gene networks.

1. Transcription regulatory regions database (TRRD): its status in 2000.

2. The TRANSFAC system on gene expression regulation.

3. The EMBL nucleotide sequence database.

4. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

5. GeneNet: a gene network database and its automated visualization.

Review 1. Charting gene regulatory networks: strategies, challenges and perspectives.

2. ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology.

3. Co-expression networks uncover regulation of splicing and transcription markers of disease.

4. GeneNet in 2005.

5. Fusing gene expressions and transitive protein-protein interactions for inference of gene regulatory networks.

6. Systems biology, bioinformatics, and biomarkers in neuropsychiatry.