Literature DB >> 11752335

HOX Pro DB: the functional genomics of hox ensembles.

Alexander V Spirov1, Mikhail Borovsky, Olesya A Spirova.   

Abstract

The HOX Pro database contains information about the organization, function and evolution of gene ensembles, notably the homeobox-containing genes. It is now clear that a subset of genes containing the homeobox motif play key roles in the orchestration of genes which control embryonic patterning, morphogenesis, cell differentiation and malignant transformation. The HOX Pro contains a broad spectrum of information including images, diagrams and animations. Currently this amounts to approximately 700 HTML pages together with 400 images which contain information on 200 groups of genes and 90 promoters, in turn linked to maps of 13 HOX clusters and nine genetic networks. There are about 700 sequences of individual hox-genes of animals classified in approximately 200 homologous or paralogous groups. Graphical representation of HOX clusters and Hox-based networks is accomplished by means of flow and 3D diagrams, JavaScript animations and Java applets. The HOX Pro now includes sections presenting data mining and data simulation issues. The DB is located at http://www.iephb.nw.ru/hoxpro.

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Year:  2002        PMID: 11752335      PMCID: PMC99118          DOI: 10.1093/nar/30.1.351

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

1.  HOX Pro: a specialized database for clusters and networks of homeobox genes.

Authors:  A V Spirov; T Bowler; J Reinitz
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

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Authors:  A V Spirov
Journal:  Zh Evol Biokhim Fiziol       Date:  1996 Sep-Oct

3.  SpHmx, a sea urchin homeobox gene expressed in embryonic pigment cells.

Authors:  P Martinez; E H Davidson
Journal:  Dev Biol       Date:  1997-01-15       Impact factor: 3.582

4.  Coordinate expression of the murine Hox-5 complex homoeobox-containing genes during limb pattern formation.

Authors:  P Dollé; J C Izpisúa-Belmonte; H Falkenstein; A Renucci; D Duboule
Journal:  Nature       Date:  1989-12-14       Impact factor: 49.962

5.  Homeobox-containing gene transiently expressed in a spatially restricted pattern in the early sea urchin embryo.

Authors:  M Di Bernardo; R Russo; P Oliveri; R Melfi; G Spinelli
Journal:  Proc Natl Acad Sci U S A       Date:  1995-08-29       Impact factor: 11.205

6.  Rapid preparation of a panel of polyclonal antibodies to Drosophila segmentation proteins.

Authors:  D Kosman; S Small; J Reinitz
Journal:  Dev Genes Evol       Date:  1998-07       Impact factor: 0.900

7.  Sequential activation of HOX2 homeobox genes by retinoic acid in human embryonal carcinoma cells.

Authors:  A Simeone; D Acampora; L Arcioni; P W Andrews; E Boncinelli; F Mavilio
Journal:  Nature       Date:  1990-08-23       Impact factor: 49.962

8.  Elucidating the genetic networks of development: a bioinformatics approach.

Authors:  J B Bard; R A Baldock; D R Davidson
Journal:  Genome Res       Date:  1998-09       Impact factor: 9.043

  8 in total
  7 in total

1.  In silico evolution of the hunchback gene indicates redundancy in cis-regulatory organization and spatial gene expression.

Authors:  Elizaveta A Zagrijchuk; Marat A Sabirov; David M Holloway; Alexander V Spirov
Journal:  J Bioinform Comput Biol       Date:  2014-03-25       Impact factor: 1.122

2.  Evolutionary Design of Gene Networks: Forced Evolution by Genomic Parasites.

Authors:  A V Spirov; E A Zagriychuk; D M Holloway
Journal:  Parallel Process Lett       Date:  2014-06

Review 3.  Hox genes and their candidate downstream targets in the developing central nervous system.

Authors:  Z N Akin; A J Nazarali
Journal:  Cell Mol Neurobiol       Date:  2005-06       Impact factor: 5.046

4.  The role of Bicoid cooperative binding in the patterning of sharp borders in Drosophila melanogaster.

Authors:  Francisco J P Lopes; Alexander V Spirov; Paulo M Bisch
Journal:  Dev Biol       Date:  2012-07-25       Impact factor: 3.582

5.  Mid-embryo patterning and precision in Drosophila segmentation: Krüppel dual regulation of hunchback.

Authors:  David M Holloway; Alexander V Spirov
Journal:  PLoS One       Date:  2015-03-20       Impact factor: 3.240

6.  Rhombomere-specific analysis reveals the repertoire of genetic cues expressed across the developing hindbrain.

Authors:  David Chambers; Leigh Jane Wilson; Fabienne Alfonsi; Ewan Hunter; Uma Saxena; Eric Blanc; Andrew Lumsden
Journal:  Neural Dev       Date:  2009-02-10       Impact factor: 3.842

7.  In silico evolution of gene cooption in pattern-forming gene networks.

Authors:  Alexander V Spirov; Marat A Sabirov; David M Holloway
Journal:  ScientificWorldJournal       Date:  2012-12-25
  7 in total

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