Literature DB >> 11752302

IDR: the ImmunoDeficiency Resource.

Jouni Väliaho1, Marianne Pusa, Tuomo Ylinen, Mauno Vihinen.   

Abstract

The ImmunoDeficiency Resource (IDR), freely available at http://www.uta.fi/imt/bioinfo/idr/, is a comprehensive knowledge base on immunodeficiencies. It is designed for different user groups such as researchers, physicians and nurses as well as patients and their families and the general public. Information on immunodeficiencies is stored as fact files, which are disease- and gene-based information resources. We have developed an inherited disease markup language (IDML) data model, which is designed for storing disease- and gene-specific data in extensible markup language (XML) format. The fact files written by the IDML can be used to present data in different contexts and platforms. All the information in the IDR is validated by expert curators.

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Year:  2002        PMID: 11752302      PMCID: PMC99120          DOI: 10.1093/nar/30.1.232

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

1.  Genomics and medicine. Dissecting human disease in the postgenomic era.

Authors:  L Peltonen; V A McKusick
Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

2.  A genomic view of immunology.

Authors:  A M Fahrer; J F Bazan; P Papathanasiou; K A Nelms; C C Goodnow
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

3.  To a future of genetic medicine.

Authors:  A Chakravarti
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

4.  Human disease genes.

Authors:  G Jimenez-Sanchez; B Childs; D Valle
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

5.  Gene therapy of human severe combined immunodeficiency (SCID)-X1 disease.

Authors:  M Cavazzana-Calvo; S Hacein-Bey; G de Saint Basile; F Gross; E Yvon; P Nusbaum; F Selz; C Hue; S Certain; J L Casanova; P Bousso; F L Deist; A Fischer
Journal:  Science       Date:  2000-04-28       Impact factor: 47.728

Review 6.  Novel immunodeficiency data servers.

Authors:  J Väliaho; P Riikonen; M Vihinen
Journal:  Immunol Rev       Date:  2000-12       Impact factor: 12.988

7.  Diagnostic criteria for primary immunodeficiencies. Representing PAGID (Pan-American Group for Immunodeficiency) and ESID (European Society for Immunodeficiencies).

Authors:  M E Conley; L D Notarangelo; A Etzioni
Journal:  Clin Immunol       Date:  1999-12       Impact factor: 3.969

Review 8.  Primary immunodeficiency mutation databases.

Authors:  M Vihinen; F X Arredondo-Vega; J L Casanova; A Etzioni; S Giliani; L Hammarström; M S Hershfield; P G Heyworth; A P Hsu; A Lähdesmäki; I Lappalainen; L D Notarangelo; J M Puck; W Reith; D Roos; R F Schumacher; K Schwarz; P Vezzoni; A Villa; J Väliaho; C I Smith
Journal:  Adv Genet       Date:  2001       Impact factor: 1.944

  8 in total
  6 in total

1.  Molecular characterization of the immune system: emergence of proteins, processes, and domains.

Authors:  Csaba Ortutay; Markku Siermala; Mauno Vihinen
Journal:  Immunogenetics       Date:  2007-02-09       Impact factor: 2.846

2.  Online registry of genetic and clinical immunodeficiency diagnostic laboratories, IDdiagnostics.

Authors:  Crina Samarghitean; Jouni Väliaho; Mauno Vihinen
Journal:  J Clin Immunol       Date:  2004-01       Impact factor: 8.317

3.  Distribution of immunodeficiency fact files with XML--from Web to WAP.

Authors:  Jouni Väliaho; Pentti Riikonen; Mauno Vihinen
Journal:  BMC Med Inform Decis Mak       Date:  2005-06-26       Impact factor: 2.796

4.  Immunome knowledge base (IKB): an integrated service for immunome research.

Authors:  Csaba Ortutay; Mauno Vihinen
Journal:  BMC Immunol       Date:  2009-01-09       Impact factor: 3.615

5.  IDR knowledge base for primary immunodeficiencies.

Authors:  Crina Samarghitean; Jouni Väliaho; Mauno Vihinen
Journal:  Immunome Res       Date:  2007-03-29

6.  Cataloging coding sequence variations in human genome databases.

Authors:  Hong-Hee Won; Hee-Jin Kim; Kyung-A Lee; Jong-Won Kim
Journal:  PLoS One       Date:  2008-10-30       Impact factor: 3.240

  6 in total

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