Literature DB >> 11752301

The DT40 web site: sampling and connecting the genes of a B cell line.

Jean-Marie Buerstedde1, Hiroshi Arakawa, Akira Watahiki, Piere Piero Carninci, Y Yoshihide Hayashizaki, Bernhard Korn, Jiri Plachy.   

Abstract

Thousands of new vertebrate genes have been discovered and genetic systems are needed to address their functions at the cellular level. The chicken B cell line DT40 allows efficient gene disruptions due to its high homologous recombination activity. However, cloning the gene of interest is often cumbersome, since relatively few chicken cDNA sequences are present in the public databases. In addition, the accumulation of multiple mutations within the same cell clone is limited by the consumption of one drug-resistance marker for each transfection. Here, we present the DT40 web site (http://genetics.hpi.uni-hamburg.de/dt40.html), which includes a comprehensive database of chicken bursal ESTs to identify disruption candidate genes and recyclable marker cassettes based on the loxP system. These freely available resources greatly facilitate the analysis of genes and genetic networks.

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Year:  2002        PMID: 11752301      PMCID: PMC99062          DOI: 10.1093/nar/30.1.230

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

1.  Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.

Authors:  P Carninci; Y Shibata; N Hayatsu; Y Sugahara; K Shibata; M Itoh; H Konno; Y Okazaki; M Muramatsu; Y Hayashizaki
Journal:  Genome Res       Date:  2000-10       Impact factor: 9.043

2.  Increased ratio of targeted to random integration after transfection of chicken B cell lines.

Authors:  J M Buerstedde; S Takeda
Journal:  Cell       Date:  1991-10-04       Impact factor: 41.582

3.  Targeted integration of DNA using mutant lox sites in embryonic stem cells.

Authors:  K Araki; M Araki; K Yamamura
Journal:  Nucleic Acids Res       Date:  1997-02-15       Impact factor: 16.971

4.  Reduced X-ray resistance and homologous recombination frequencies in a RAD54-/- mutant of the chicken DT40 cell line.

Authors:  O Bezzubova; A Silbergleit; Y Yamaguchi-Iwai; S Takeda; J M Buerstedde
Journal:  Cell       Date:  1997-04-18       Impact factor: 41.582

Review 5.  Genetic analysis of B cell antigen receptor signaling.

Authors:  T Kurosaki
Journal:  Annu Rev Immunol       Date:  1999       Impact factor: 28.527

6.  Heterozygous disruption of the TATA-binding protein gene in DT40 cells causes reduced cdc25B phosphatase expression and delayed mitosis.

Authors:  M Um; J Yamauchi; S Kato; J L Manley
Journal:  Mol Cell Biol       Date:  2001-04       Impact factor: 4.272

7.  Comparison of the tamoxifen regulated chimeric Cre recombinases MerCreMer and CreMer.

Authors:  C Verrou; Y Zhang; C Zürn; W W Schamel; M Reth
Journal:  Biol Chem       Date:  1999-12       Impact factor: 3.915

8.  A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function.

Authors:  I Abdrakhmanov; D Lodygin; P Geroth; H Arakawa; A Law; J Plachy; B Korn; J M Buerstedde
Journal:  Genome Res       Date:  2000-12       Impact factor: 9.043

Review 9.  Embryonic stem cells and gene targeting.

Authors:  B Ledermann
Journal:  Exp Physiol       Date:  2000-11       Impact factor: 2.969

10.  Chromosome instability and defective recombinational repair in knockout mutants of the five Rad51 paralogs.

Authors:  M Takata; M S Sasaki; S Tachiiri; T Fukushima; E Sonoda; D Schild; L H Thompson; S Takeda
Journal:  Mol Cell Biol       Date:  2001-04       Impact factor: 4.272

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  8 in total

1.  Insight into lymphoid development by gene expression profiling of avian B cells.

Authors:  Kimmo Koskela; Pekka Kohonen; Pia Nieminen; Jean-Marie Buerstedde; Olli Lassila
Journal:  Immunogenetics       Date:  2003-08-21       Impact factor: 2.846

2.  Identification and characterization of a functional, alternatively spliced Toll-like receptor 7 (TLR7) and genomic disruption of TLR8 in chickens.

Authors:  Victoria J Philbin; Muhammad Iqbal; Yvonne Boyd; Marianne J Goodchild; Richard K Beal; Nat Bumstead; John Young; Adrian L Smith
Journal:  Immunology       Date:  2005-04       Impact factor: 7.397

3.  Identification and functional characterization of chicken toll-like receptor 5 reveals a fundamental role in the biology of infection with Salmonella enterica serovar typhimurium.

Authors:  Muhammad Iqbal; Victoria J Philbin; G S K Withanage; Paul Wigley; Richard K Beal; Marianne J Goodchild; Paul Barrow; Ian McConnell; Duncan J Maskell; John Young; Nat Bumstead; Yvonne Boyd; Adrian L Smith
Journal:  Infect Immun       Date:  2005-04       Impact factor: 3.441

4.  Conditional human VEGF-mediated vascularization in chicken embryos using a novel temperature-inducible gene regulation (TIGR) system.

Authors:  Wilfried Weber; René R Marty; Nils Link; Martin Ehrbar; Bettina Keller; Cornelia C Weber; Andreas H Zisch; Christoph Heinzen; Valentin Djonov; Martin Fussenegger
Journal:  Nucleic Acids Res       Date:  2003-06-15       Impact factor: 16.971

5.  Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line.

Authors:  Matthias B Wahl; Randolph B Caldwell; Andrzej M Kierzek; Hiroshi Arakawa; Eduardo Eyras; Nina Hubner; Christian Jung; Manuel Soeldenwagner; Manuela Cervelli; Yan-Dong Wang; Volkmar Liebscher; Jean-Marie Buerstedde
Journal:  BMC Genomics       Date:  2004-12-21       Impact factor: 3.969

6.  Development of a cDNA array for chicken gene expression analysis.

Authors:  Joan Burnside; Paul Neiman; Jianshan Tang; Ryan Basom; Richard Talbot; Mark Aronszajn; David Burt; Jeff Delrow
Journal:  BMC Genomics       Date:  2005-02-04       Impact factor: 3.969

7.  Chromatin structure regulates gene conversion.

Authors:  W Jason Cummings; Munehisa Yabuki; Ellen C Ordinario; David W Bednarski; Simon Quay; Nancy Maizels
Journal:  PLoS Biol       Date:  2007-10       Impact factor: 8.029

8.  MicroRNA expression profiles in avian haemopoietic cells.

Authors:  Yongxiu Yao; Jane Charlesworth; Venugopal Nair; Mick Watson
Journal:  Front Genet       Date:  2013-08-14       Impact factor: 4.599

  8 in total

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