Literature DB >> 11752274

The Celera Discovery System.

Anthony Kerlavage1, Vivien Bonazzi, Matteo di Tommaso, Charles Lawrence, Peter Li, Frank Mayberry, Richard Mural, Marc Nodell, Mark Yandell, Jinghui Zhang, Paul Thomas.   

Abstract

The Celera Discovery System (CDS) is a web-accessible research workbench for mining genomic and related biological information. Users have access to the human and mouse genome sequences with annotation presented in summary form in BioMolecule Reports for genes, transcripts and proteins. Over 40 additional databases are available, including sequence, mapping, mutation, genetic variation, mRNA expression, protein structure, motif and classification data. Data are accessible by browsing reports, through a variety of interactive graphical viewers, and by advanced query capability provided by the LION SRS search engine. A growing number of sequence analysis tools are available, including sequence similarity, pattern searching, multiple sequence alignment and Hidden Markov Model search. A user workspace keeps track of queries and analyses. CDS is widely used by the academic research community and requires a subscription for access. The system and academic pricing information are available at http://cds.celera.com.

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Year:  2002        PMID: 11752274      PMCID: PMC99167          DOI: 10.1093/nar/30.1.129

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

1.  The TRANSFAC system on gene expression regulation.

Authors:  E Wingender; X Chen; E Fricke; R Geffers; R Hehl; I Liebich; M Krull; V Matys; H Michael; R Ohnhäuser; M Prüss; F Schacherer; S Thiele; S Urbach
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays.

Authors:  S Brenner; M Johnson; J Bridgham; G Golda; D H Lloyd; D Johnson; S Luo; S McCurdy; M Foy; M Ewan; R Roth; D George; S Eletr; G Albrecht; E Vermaas; S R Williams; K Moon; T Burcham; M Pallas; R B DuBridge; J Kirchner; K Fearon; J Mao; K Corcoran
Journal:  Nat Biotechnol       Date:  2000-06       Impact factor: 54.908

3.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

4.  Serial analysis of gene expression.

Authors:  V E Velculescu; L Zhang; B Vogelstein; K W Kinzler
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

5.  Alignment of whole genomes.

Authors:  A L Delcher; S Kasif; R D Fleischmann; J Peterson; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-06-01       Impact factor: 16.971

6.  The human gene mutation database.

Authors:  D N Cooper; E V Ball; M Krawczak
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

7.  The sequence of the human genome.

Authors:  J C Venter; M D Adams; E W Myers; P W Li; R J Mural; G G Sutton; H O Smith; M Yandell; C A Evans; R A Holt; J D Gocayne; P Amanatides; R M Ballew; D H Huson; J R Wortman; Q Zhang; C D Kodira; X H Zheng; L Chen; M Skupski; G Subramanian; P D Thomas; J Zhang; G L Gabor Miklos; C Nelson; S Broder; A G Clark; J Nadeau; V A McKusick; N Zinder; A J Levine; R J Roberts; M Simon; C Slayman; M Hunkapiller; R Bolanos; A Delcher; I Dew; D Fasulo; M Flanigan; L Florea; A Halpern; S Hannenhalli; S Kravitz; S Levy; C Mobarry; K Reinert; K Remington; J Abu-Threideh; E Beasley; K Biddick; V Bonazzi; R Brandon; M Cargill; I Chandramouliswaran; R Charlab; K Chaturvedi; Z Deng; V Di Francesco; P Dunn; K Eilbeck; C Evangelista; A E Gabrielian; W Gan; W Ge; F Gong; Z Gu; P Guan; T J Heiman; M E Higgins; R R Ji; Z Ke; K A Ketchum; Z Lai; Y Lei; Z Li; J Li; Y Liang; X Lin; F Lu; G V Merkulov; N Milshina; H M Moore; A K Naik; V A Narayan; B Neelam; D Nusskern; D B Rusch; S Salzberg; W Shao; B Shue; J Sun; Z Wang; A Wang; X Wang; J Wang; M Wei; R Wides; C Xiao; C Yan; A Yao; J Ye; M Zhan; W Zhang; H Zhang; Q Zhao; L Zheng; F Zhong; W Zhong; S Zhu; S Zhao; D Gilbert; S Baumhueter; G Spier; C Carter; A Cravchik; T Woodage; F Ali; H An; A Awe; D Baldwin; H Baden; M Barnstead; I Barrow; K Beeson; D Busam; A Carver; A Center; M L Cheng; L Curry; S Danaher; L Davenport; R Desilets; S Dietz; K Dodson; L Doup; S Ferriera; N Garg; A Gluecksmann; B Hart; J Haynes; C Haynes; C Heiner; S Hladun; D Hostin; J Houck; T Howland; C Ibegwam; J Johnson; F Kalush; L Kline; S Koduru; A Love; F Mann; D May; S McCawley; T McIntosh; I McMullen; M Moy; L Moy; B Murphy; K Nelson; C Pfannkoch; E Pratts; V Puri; H Qureshi; M Reardon; R Rodriguez; Y H Rogers; D Romblad; B Ruhfel; R Scott; C Sitter; M Smallwood; E Stewart; R Strong; E Suh; R Thomas; N N Tint; S Tse; C Vech; G Wang; J Wetter; S Williams; M Williams; S Windsor; E Winn-Deen; K Wolfe; J Zaveri; K Zaveri; J F Abril; R Guigó; M J Campbell; K V Sjolander; B Karlak; A Kejariwal; H Mi; B Lazareva; T Hatton; A Narechania; K Diemer; A Muruganujan; N Guo; S Sato; V Bafna; S Istrail; R Lippert; R Schwartz; B Walenz; S Yooseph; D Allen; A Basu; J Baxendale; L Blick; M Caminha; J Carnes-Stine; P Caulk; Y H Chiang; M Coyne; C Dahlke; A Deslattes Mays; M Dombroski; M Donnelly; D Ely; S Esparham; C Fosler; H Gire; S Glanowski; K Glasser; A Glodek; M Gorokhov; K Graham; B Gropman; M Harris; J Heil; S Henderson; J Hoover; D Jennings; C Jordan; J Jordan; J Kasha; L Kagan; C Kraft; A Levitsky; M Lewis; X Liu; J Lopez; D Ma; W Majoros; J McDaniel; S Murphy; M Newman; T Nguyen; N Nguyen; M Nodell; S Pan; J Peck; M Peterson; W Rowe; R Sanders; J Scott; M Simpson; T Smith; A Sprague; T Stockwell; R Turner; E Venter; M Wang; M Wen; D Wu; M Wu; A Xia; A Zandieh; X Zhu
Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

  7 in total
  18 in total

1.  The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern.

Authors:  Francisco M De La Vega; Hadar Isaac; Andrew Collins; Charles R Scafe; Bjarni V Halldórsson; Xiaoping Su; Ross A Lippert; Yu Wang; Marion Laig-Webster; Ryan T Koehler; Janet S Ziegle; Lewis T Wogan; Junko F Stevens; Kyle M Leinen; Sheri J Olson; Karl J Guegler; Xiaoqing You; Lily H Xu; Heinz G Hemken; Francis Kalush; Mitsuo Itakura; Yi Zheng; Guy de Thé; Stephen J O'Brien; Andrew G Clark; Sorin Istrail; Michael W Hunkapiller; Eugene G Spier; Dennis A Gilbert
Journal:  Genome Res       Date:  2005-03-21       Impact factor: 9.043

Review 2.  The Indian Genome Variation database (IGVdb): a project overview.

Authors: 
Journal:  Hum Genet       Date:  2005-08-25       Impact factor: 4.132

3.  Fine mapping of a major locus on chromosome 10 for exploratory and fear-like behavior in mice.

Authors:  Shumin Zhang; Yigong Lou; Tara M Amstein; Monica Anyango; Neeman Mohibullah; Alfred Osoti; Devin Stancliffe; Robert King; Fuad Iraqi; Howard K Gershenfeld
Journal:  Mamm Genome       Date:  2005-05       Impact factor: 2.957

4.  Bioinformatic analysis of neural stem cell differentiation.

Authors:  Loyal A Goff; Jonathan Davila; Rebecka Jörnsten; Sunduz Keles; Ronald P Hart
Journal:  J Biomol Tech       Date:  2007-09

5.  The SNPlex genotyping system: a flexible and scalable platform for SNP genotyping.

Authors:  Andreas R Tobler; Sabine Short; Mark R Andersen; Teodoro M Paner; Jason C Briggs; Stephen M Lambert; Priscilla P Wu; Yiwen Wang; Alexander Y Spoonde; Ryan T Koehler; Nicolas Peyret; Caifu Chen; Adam J Broomer; Dana A Ridzon; Hui Zhou; Bradley S Hoo; Kathleen C Hayashibara; Lilley N Leong; Congcong N Ma; Barnet B Rosenblum; Joseph P Day; Janet S Ziegle; Francisco M De La Vega; Michael D Rhodes; Kevin M Hennessy; H Michael Wenz
Journal:  J Biomol Tech       Date:  2005-12

6.  Mutation of l7Rn3 shows that Odz4 is required for mouse gastrulation.

Authors:  Amy C Lossie; Hisashi Nakamura; Sharon E Thomas; Monica J Justice
Journal:  Genetics       Date:  2004-10-16       Impact factor: 4.562

7.  A gene atlas of the mouse and human protein-encoding transcriptomes.

Authors:  Andrew I Su; Tim Wiltshire; Serge Batalov; Hilmar Lapp; Keith A Ching; David Block; Jie Zhang; Richard Soden; Mimi Hayakawa; Gabriel Kreiman; Michael P Cooke; John R Walker; John B Hogenesch
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-09       Impact factor: 11.205

8.  An integrated mass-spectrometry pipeline identifies novel protein coding-regions in the human genome.

Authors:  Danny A Bitton; Duncan L Smith; Yvonne Connolly; Paul J Scutt; Crispin J Miller
Journal:  PLoS One       Date:  2010-01-28       Impact factor: 3.240

9.  Hybrid embryonic stem cell-derived tetraploid mice show apparently normal morphological, physiological, and neurological characteristics.

Authors:  Frieder Schwenk; Branko Zevnik; Jens Brüning; Mathias Röhl; Antje Willuweit; Anja Rode; Thomas Hennek; Gunther Kauselmann; Rudolf Jaenisch; Ralf Kühn
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

10.  Large-scale identification of disease genes involved in acute myeloid leukemia.

Authors:  Stefan J Erkeland; Marijke Valkhof; Claudia Heijmans-Antonissen; Antoinette van Hoven-Beijen; Ruud Delwel; Mirjam H A Hermans; Ivo P Touw
Journal:  J Virol       Date:  2004-02       Impact factor: 5.103

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