Literature DB >> 11751293

Kernel estimates for one- and two-dimensional ion channel dwell-time densities.

Rafael A Rosales1, William J Fitzgerald, Stephen B Hladky.   

Abstract

In this paper, we compare nonparametric kernel estimates with smoothed histograms as methods for displaying logarithmically transformed dwell-time distributions. Kernel density plots provide a simpler means for producing estimates of the probability density function (pdf) and they have the advantage of being smoothed in a well-specified, carefully controlled manner. Smoothing is essential for multidimensional plots because, with realistic amounts of data, the number of counts per bin is small. Examples are presented for a 2-dimensional pdf and its associated dependency-difference plot that display the correlations between successive dwell times.

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Year:  2002        PMID: 11751293      PMCID: PMC1302446          DOI: 10.1016/S0006-3495(02)75371-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  7 in total

1.  Adjustments for the display of quantized ion channel dwell times in histograms with logarithmic bins.

Authors:  J A Stark; S B Hladky
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

2.  Bayesian restoration of ion channel records using hidden Markov models.

Authors:  R Rosales; J A Stark; W J Fitzgerald; S B Hladky
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

3.  Dependency plots suggest the kinetic structure of ion channels.

Authors:  K L Magleby; L Song
Journal:  Proc Biol Sci       Date:  1992-08-22       Impact factor: 5.349

4.  Quantitative description of three modes of activity of fast chloride channels from rat skeletal muscle.

Authors:  A L Blatz; K L Magleby
Journal:  J Physiol       Date:  1986-09       Impact factor: 5.182

5.  Sampling, log binning, fitting, and plotting durations of open and shut intervals from single channels and the effects of noise.

Authors:  O B McManus; A L Blatz; K L Magleby
Journal:  Pflugers Arch       Date:  1987-11       Impact factor: 3.657

6.  Data transformations for improved display and fitting of single-channel dwell time histograms.

Authors:  F J Sigworth; S M Sine
Journal:  Biophys J       Date:  1987-12       Impact factor: 4.033

7.  On the stochastic properties of bursts of single ion channel openings and of clusters of bursts.

Authors:  D Colquhoun; A G Hawkes
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1982-12-24       Impact factor: 6.237

  7 in total
  5 in total

1.  The power of two-dimensional dwell-time analysis for model discrimination, temporal resolution, multichannel analysis and level detection.

Authors:  Tobias Huth; Indra Schroeder; Ulf-Peter Hansen
Journal:  J Membr Biol       Date:  2007-06-06       Impact factor: 1.843

2.  Allosteric control of gating mechanisms revisited: the large conductance Ca2+-activated K+ channel.

Authors:  Rafael A Rosales; Wamberto A Varanda
Journal:  Biophys J       Date:  2009-05-20       Impact factor: 4.033

3.  Trends in body mass index according to educational attainment for urban Australian adults between 1980 and 2007.

Authors:  E Gearon; K Backholer; C Stevenson; D J Magliano; C Keating; K Ball; A Beauchamp; A Peeters
Journal:  Int J Obes (Lond)       Date:  2015-03-16       Impact factor: 5.095

4.  Calcium regulation of single ryanodine receptor channel gating analyzed using HMM/MCMC statistical methods.

Authors:  Rafael A Rosales; Michael Fill; Ariel L Escobar
Journal:  J Gen Physiol       Date:  2004-05       Impact factor: 4.086

5.  Subconductance gating and voltage sensitivity of sarcoplasmic reticulum K(+) channels: a modeling approach.

Authors:  Antoni Matyjaszkiewicz; Elisa Venturi; Fiona O'Brien; Tsunaki Iida; Miyuki Nishi; Hiroshi Takeshima; Krasimira Tsaneva-Atanasova; Rebecca Sitsapesan
Journal:  Biophys J       Date:  2015-07-21       Impact factor: 4.033

  5 in total

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