Literature DB >> 11751235

Promoter Extraction from GenBank (PEG): automatic extraction of eukaryotic promoter sequences in large sets of genes.

T Zhang1, M Zhang.   

Abstract

UNLABELLED: Promoter Extraction from GenBank (PEG) extracts promoter sequences for large sets of genes using information present in GenBank. For a gene whose promoter sequence is not found, PEG will attempt to extract promoter sequences of the orthologous genes instead. AVAILABILITY: It is freely available to academic users at ftp://cshl.org/pub/science/mzhanglab/theresa/. CONTACT: zhangt@cshl.org; mzhang@cshl.org

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Year:  2001        PMID： 11751235     DOI： 10.1093/bioinformatics/17.12.1232

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  5 in total

1.  EZ-Retrieve: a web-server for batch retrieval of coordinate-specified human DNA sequences and underscoring putative transcription factor-binding sites.

Authors:  Haibo Zhang; Y Ramanathan; Patricia Soteropoulos; Michael L Recce; Peter P Tolias
Journal:  Nucleic Acids Res       Date:  2002-11-01       Impact factor: 16.971

2.  An approach to identify over-represented cis-elements in related sequences.

Authors:  Jiashun Zheng; Jiajin Wu; Zhirong Sun
Journal:  Nucleic Acids Res       Date:  2003-04-01       Impact factor: 16.971

3.  FIE2: A program for the extraction of genomic DNA sequences around the start and translation initiation site of human genes.

Authors:  Allen Chong; Guanglan Zhang; Vladimir B Bajic
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

4.  PromoSer: A large-scale mammalian promoter and transcription start site identification service.

Authors:  Anason S Halees; Dmitriy Leyfer; Zhiping Weng
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

5.  ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters.

Authors:  Oleg V Vishnevsky; Nikolay A Kolchanov
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971
  5 in total

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