Literature DB >> 11751234

Sequence type analysis and recombinational tests (START).

K A Jolley1, E J Feil, M S Chan, M C Maiden.   

Abstract

UNLABELLED: The 32-bit Windows application START is implemented using Visual Basic and C(++) and performs analyses to aid in the investigation of bacterial population structure using multilocus sequence data. These analyses include data summary, lineage assignment, and tests for recombination and selection. AVAILABILITY: START is available at http://outbreak.ceid.ox.ac.uk/software.htm. CONTACT: keith.jolley@ceid.ox.ac.uk

Mesh:

Year:  2001        PMID: 11751234     DOI: 10.1093/bioinformatics/17.12.1230

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  237 in total

1.  Multilocus sequence typing subtypes of poultry Clostridium perfringens isolates demonstrate disease niche partitioning.

Authors:  M C Hibberd; A P Neumann; T G Rehberger; G R Siragusa
Journal:  J Clin Microbiol       Date:  2011-01-26       Impact factor: 5.948

2.  Influence of seasonality on the genetic diversity of Vibrio parahaemolyticus in New Hampshire shellfish waters as determined by multilocus sequence analysis.

Authors:  Crystal N Ellis; Brian M Schuster; Megan J Striplin; Stephen H Jones; Cheryl A Whistler; Vaughn S Cooper
Journal:  Appl Environ Microbiol       Date:  2012-03-09       Impact factor: 4.792

3.  Decreasing trend of overlapping multilocus sequence types between human and chicken Campylobacter jejuni isolates over a decade in Finland.

Authors:  C P A de Haan; R Kivistö; M Hakkinen; H Rautelin; M L Hänninen
Journal:  Appl Environ Microbiol       Date:  2010-06-11       Impact factor: 4.792

4.  Recombination shapes the structure of an environmental Vibrio cholerae population.

Authors:  Daniel P Keymer; Alexandria B Boehm
Journal:  Appl Environ Microbiol       Date:  2010-11-12       Impact factor: 4.792

5.  Multilocus sequence typing of Porphyromonas gingivalis strains from different geographic origins.

Authors:  Morten Enersen; Ingar Olsen; Arie J van Winkelhoff; Dominique A Caugant
Journal:  J Clin Microbiol       Date:  2006-01       Impact factor: 5.948

6.  Distribution of serogroups and genotypes among disease-associated and carried isolates of Neisseria meningitidis from the Czech Republic, Greece, and Norway.

Authors:  Siamak P Yazdankhah; Paula Kriz; Georgina Tzanakaki; Jenny Kremastinou; Jitka Kalmusova; Martin Musilek; Torill Alvestad; Keith A Jolley; Daniel J Wilson; Noel D McCarthy; Dominique A Caugant; Martin C J Maiden
Journal:  J Clin Microbiol       Date:  2004-11       Impact factor: 5.948

Review 7.  Multilocus sequence typing: Data analysis in clinical microbiology and public health.

Authors:  Christopher B Sullivan; Matthew A Diggle; Stuart C Clarke
Journal:  Mol Biotechnol       Date:  2005-03       Impact factor: 2.695

8.  Adaptation and incipient sympatric speciation of Bacillus simplex under microclimatic contrast at "Evolution Canyons" I and II, Israel.

Authors:  Johannes Sikorski; Eviatar Nevo
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-25       Impact factor: 11.205

9.  Molecular characterization of a widespread, pathogenic, and antibiotic resistance-receptive Enterococcus faecalis lineage and dissemination of its putative pathogenicity island.

Authors:  Sreedhar R Nallapareddy; Huang Wenxiang; George M Weinstock; Barbara E Murray
Journal:  J Bacteriol       Date:  2005-08       Impact factor: 3.490

10.  Phylogenetic analysis of Clostridium botulinum type A by multi-locus sequence typing.

Authors:  Mark J Jacobson; Guangyun Lin; Thomas S Whittam; Eric A Johnson
Journal:  Microbiology       Date:  2008-08       Impact factor: 2.777

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.