Literature DB >> 11750809

Comparative phylogeny of the ammonia monooxygenase subunit A and 16S rRNA genes of ammonia-oxidizing bacteria.

A Aakra1, J B Utåker, I F Nes.   

Abstract

A fragment of the ammonia monooxygenase gene (amoA) from 31 strains of ammonia-oxidizing bacteria (AOB) was sequenced and analysed phylogenetically. The results were compared with the phylogeny of 16S rDNA from AOB. For most groups of AOB we found a high consistency between the phylogenetic trees based on the 16S rDNA and amoA sequences. Although it is not a phylogenetic marker, using the amoA as a probe when studying microbial diversity will probably reduce the amount of non-AOB detected, compared to using rDNA based probes. The data presented in this paper extend and improve the basis for application of amoA in studies of AOB in the environment.

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Year:  2001        PMID: 11750809     DOI: 10.1111/j.1574-6968.2001.tb10954.x

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN: 0378-1097            Impact factor:   2.742


  13 in total

1.  Denaturing gradient gel electrophoretic analysis of ammonia-oxidizing bacterial community structure in the lower Seine River: impact of Paris wastewater effluents.

Authors:  Aurélie Cébron; Manuela Coci; Josette Garnier; Hendrikus J Laanbroek
Journal:  Appl Environ Microbiol       Date:  2004-11       Impact factor: 4.792

2.  Changes in nitrogen-fixing and ammonia-oxidizing bacterial communities in soil of a mixed conifer forest after wildfire.

Authors:  Chris M Yeager; Diana E Northup; Christy C Grow; Susan M Barns; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2005-05       Impact factor: 4.792

3.  Response of Nitrosospira sp. strain AF-like ammonia oxidizers to changes in temperature, soil moisture content, and fertilizer concentration.

Authors:  Sharon Avrahami; Brendan J M Bohannan
Journal:  Appl Environ Microbiol       Date:  2006-12-08       Impact factor: 4.792

4.  Intensive management affects composition of betaproteobacterial ammonia oxidizers in turfgrass systems.

Authors:  Emily A Dell; Daniel Bowman; Thomas Rufty; Wei Shi
Journal:  Microb Ecol       Date:  2007-11-27       Impact factor: 4.552

5.  Community dynamics and activity of ammonia-oxidizing prokaryotes in intertidal sediments of the Yangtze estuary.

Authors:  Yanling Zheng; Lijun Hou; Silvia Newell; Min Liu; Junliang Zhou; Hui Zhao; Lili You; Xunliang Cheng
Journal:  Appl Environ Microbiol       Date:  2013-11-01       Impact factor: 4.792

6.  Effect of soil ammonium concentration on N2O release and on the community structure of ammonia oxidizers and denitrifiers.

Authors:  Sharon Avrahami; Ralf Conrad; Gesche Braker
Journal:  Appl Environ Microbiol       Date:  2002-11       Impact factor: 4.792

7.  Effects of aeration cycles on nitrifying bacterial populations and nitrogen removal in intermittently aerated reactors.

Authors:  Cesar Mota; Melanie A Head; Jennifer A Ridenoure; Jay J Cheng; Francis L de Los Reyes
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

8.  Low nitrification rates in acid Scots pine forest soils are due to pH-related factors.

Authors:  R A Nugroho; W F M Röling; A M Laverman; H A Verhoef
Journal:  Microb Ecol       Date:  2006-12-22       Impact factor: 4.552

9.  Ammonia-oxidizing bacteria along meadow-to-forest transects in the Oregon Cascade Mountains.

Authors:  A T Mintie; R S Heichen; K Cromack; D D Myrold; P J Bottomley
Journal:  Appl Environ Microbiol       Date:  2003-06       Impact factor: 4.792

10.  Community analysis of betaproteobacterial ammonia-oxidizing bacteria using the amoCAB operon.

Authors:  Pilar Junier; Ok-Sun Kim; Thomas Junier; Tae-Seok Ahn; Johannes F Imhoff; Karl-Paul Witzel
Journal:  Appl Microbiol Biotechnol       Date:  2009-03-10       Impact factor: 4.813

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