Literature DB >> 11749574

Modular Chemical Descriptor Language (MCDL): composition, connectivity, and supplementary modules.

A A Gakh1, M N Burnett.   

Abstract

The Modular Chemical Descriptor Language (MCDL) was developed to address the need for linear representation of structural and other chemical information for chemical databases, E-journals, and the Internet. The current paper describes in detail two major modules of the language: the composition and connectivity modules, which provide a representation of chemical structure. These modules are created using simple hierarchical principles based on ASCII codes and are unique except for stereoisomers and a few special cases (e.g., valence isomers, knot-type compounds). The MCDL also provides for additional information (such as atom coordinates, bond orders, spectra, and physical-chemical characteristics) to be included as a set of supplementary modules.

Year:  2001        PMID: 11749574     DOI: 10.1021/ci000108y

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  8 in total

1.  A Java chemical structure editor supporting the Modular Chemical Descriptor Language (MCDL).

Authors:  Sergei V Trepalin; Alexander V Yarkov; Igor V Pletnev; Andrei A Gakh
Journal:  Molecules       Date:  2006-03-29       Impact factor: 4.411

2.  Towards a Universal SMILES representation - A standard method to generate canonical SMILES based on the InChI.

Authors:  Noel M O'Boyle
Journal:  J Cheminform       Date:  2012-09-18       Impact factor: 5.514

3.  Neural systems language: a formal modeling language for the systematic description, unambiguous communication, and automated digital curation of neural connectivity.

Authors:  Ramsay A Brown; Larry W Swanson
Journal:  J Comp Neurol       Date:  2013-09-01       Impact factor: 3.215

4.  Modular Chemical Descriptor Language (MCDL): Stereochemical modules.

Authors:  Andrei A Gakh; Michael N Burnett; Sergei V Trepalin; Alexander V Yarkov
Journal:  J Cheminform       Date:  2011-01-31       Impact factor: 5.514

5.  Open Babel: An open chemical toolbox.

Authors:  Noel M O'Boyle; Michael Banck; Craig A James; Chris Morley; Tim Vandermeersch; Geoffrey R Hutchison
Journal:  J Cheminform       Date:  2011-10-07       Impact factor: 5.514

6.  PubChem chemical structure standardization.

Authors:  Volker D Hähnke; Sunghwan Kim; Evan E Bolton
Journal:  J Cheminform       Date:  2018-08-10       Impact factor: 5.514

7.  BigSMILES: A Structurally-Based Line Notation for Describing Macromolecules.

Authors:  Tzyy-Shyang Lin; Connor W Coley; Hidenobu Mochigase; Haley K Beech; Wencong Wang; Zi Wang; Eliot Woods; Stephen L Craig; Jeremiah A Johnson; Julia A Kalow; Klavs F Jensen; Bradley D Olsen
Journal:  ACS Cent Sci       Date:  2019-09-12       Impact factor: 14.553

8.  PubChem atom environments.

Authors:  Volker D Hähnke; Evan E Bolton; Stephen H Bryant
Journal:  J Cheminform       Date:  2015-08-19       Impact factor: 5.514

  8 in total

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