Literature DB >> 11741760

STR primer concordance study.

B Budowle1, A Masibay, S J Anderson, C Barna, L Biega, S Brenneke, B L Brown, J Cramer, G A DeGroot, D Douglas, B Duceman, A Eastman, R Giles, J Hamill, D J Haase, D W Janssen, T D Kupferschmid, T Lawton, C Lemire, B Llewellyn, T Moretti, J Neves, C Palaski, S Schueler, J Sgueglia, C Sprecher, C Tomsey, D Yet.   

Abstract

Over 1500 population database samples comprising African Americans, Caucasians, Hispanics, Native Americans, Chamorros and Filipinos were typed using the PowerPlex 16 and the Profiler Plus/COfiler kits. Except for the D8S1179 locus in Chamorros and Filipinos from Guam, there were eight examples in which a typing difference due to allele dropout was observed. At the D8S1179 locus in the population samples from Guam, there were 13 examples of allele dropout observed when using the Profiler Plus kit. The data support that the primers used in the PowerPlex 16, Profiler Plus, and COfiler kits are reliable for typing reference samples that are for use in CODIS. In addition, allele frequency databases have been established for the STR loci Penta D and Penta E. Both loci are highly polymorphic.

Mesh:

Year:  2001        PMID: 11741760     DOI: 10.1016/s0379-0738(01)00563-1

Source DB:  PubMed          Journal:  Forensic Sci Int        ISSN: 0379-0738            Impact factor:   2.395


  12 in total

1.  Variant alleles, triallelic patterns, and point mutations observed in nuclear short tandem repeat typing of populations in Bosnia and Serbia.

Authors:  René L M Huel; Lara Basić; Kamelija Madacki-Todorović; Lejla Smajlović; Izet Eminović; Irfan Berbić; Ana Milos; Thomas J Parsons
Journal:  Croat Med J       Date:  2007-08       Impact factor: 1.351

2.  An INDEL polymorphism at the X-STR GATA172D05 flanking region.

Authors:  Elzemar Martins Ribeiro Rodrigues; Ney Pereira Carneiro dos Santos; Andrea Kely Campos Ribeiro dos Santos; Anderson Nonato Marinho; Marco Antonio Zago; Iva Gomes; António Amorim; Leonor Gusmão; Sidney Emanuel Batista dos Santos
Journal:  Int J Legal Med       Date:  2008-12-02       Impact factor: 2.686

3.  False homozygosities at CSF1PO loci revealed by discrepancies between two kits in Chinese population.

Authors:  Xian-Dun Zhai; Xiao-Qi Xue; Yao-Nan Mo; Gui-Sei Zhao; Hong-Wei Ai; Yi Ye; Zheng Wang; Yi-Ping Hou
Journal:  Int J Legal Med       Date:  2009-10-30       Impact factor: 2.686

4.  Rare sequence variation in the genome flanking a short tandem repeat locus can lead to a question of "nonmaternity".

Authors:  Anne Deucher; Tsoyu Chiang; Iris Schrijver
Journal:  J Mol Diagn       Date:  2010-03-04       Impact factor: 5.568

5.  Screening of cerebral infarction-related genetic markers using a Cox regression analysis between onset age and heterozygosity at randomly selected short tandem repeat loci.

Authors:  Liu Hui; Tian Jun; Ye Jing; Weijian Yu
Journal:  J Thromb Thrombolysis       Date:  2012-05       Impact factor: 2.300

Review 6.  Donor cell leukemia in umbilical cord blood transplant patients: a case study and literature review highlighting the importance of molecular engraftment analysis.

Authors:  Jennifer Crow; Kenneth Youens; Susan Michalowski; Gail Perrine; Cassandra Emhart; Felicia Johnson; Amy Gerling; Joanne Kurtzberg; Barbara K Goodman; Siby Sebastian; Catherine W Rehder; Michael B Datto
Journal:  J Mol Diagn       Date:  2010-04-29       Impact factor: 5.568

7.  Short-read, high-throughput sequencing technology for STR genotyping.

Authors:  Daniel M Bornman; Mark E Hester; Jared M Schuetter; Manjula D Kasoji; Angela Minard-Smith; Curt A Barden; Scott C Nelson; Gene D Godbold; Christine H Baker; Boyu Yang; Jacquelyn E Walther; Ivan E Tornes; Pearlly S Yan; Benjamin Rodriguez; Ralf Bundschuh; Michael L Dickens; Brian A Young; Seth A Faith
Journal:  Biotech Rapid Dispatches       Date:  2012-04

8.  Null allele sequence structure at the DYS448 locus and implications for profile interpretation.

Authors:  Bruce Budowle; Xavier G Aranda; Robert E Lagace; Lori K Hennessy; John V Planz; Manuel Rodriguez; Arthur J Eisenberg
Journal:  Int J Legal Med       Date:  2008-06-26       Impact factor: 2.686

9.  Autosomal short tandem repeat genetic variation of the Basques in Spain.

Authors:  Kristin L Young; Guangyun Sun; Ranjan Deka; Michael H Crawford
Journal:  Croat Med J       Date:  2011-06       Impact factor: 1.351

10.  Developing criteria and data to determine best options for expanding the core CODIS loci.

Authors:  Jianye Ge; Arthur Eisenberg; Bruce Budowle
Journal:  Investig Genet       Date:  2012-01-06
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